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Open Access Research article

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

Sung-Chur Sim1, Matthew D Robbins1, Charles Chilcott2, Tong Zhu2 and David M Francis1*

Author Affiliations

1 Department of Horticulture and Crop Science, The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Ave, Wooster, OH 44691, USA

2 Syngenta Biotechnology, Inc, 3054 East Cornwallis Road, Research Triangle Park, NC 27709, USA

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BMC Genomics 2009, 10:466  doi:10.1186/1471-2164-10-466

Published: 9 October 2009

Additional files

Additional file 1:

SNP variation for three tomato varieties, FL7600, OH9242, and PI114490 used in SFP discovery. The data includes locus names and SNP positions, flanking sequences, and primers.

Format: XLS Size: 108KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

InDel variation for three tomato varieties, FL7600, OH9242, and PI114490 used in SFP discovery. The data includes locus names and InDel positions, flanking sequences, and primers.

Format: XLS Size: 31KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Description and SNP genotypes of plant materials used in this study. The data includes categorical details of 92 tomato varieties and accessions with genotypes at 46 loci.

Format: XLS Size: 85KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Summary of allelic diversity analysis at 51 loci. The summary shows allelic diversity of 92 tomato varieties and accessions divided into five groups, fresh-market, processing, vintage, landrace, and wild species.

Format: XLS Size: 35KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data