Table 13

Co-occurrence in 3'UTRs

Word1

Word2

S

ES

S*ln(S/ES)


TTCTTTTT

TTTTTCTT

322

238.5802

96.5504


TGTTTTTT

TTTTTCTT

283

217.7183

74.2154


TTCTTTTT

TTTTTTCT

260

197.5705

71.3925


TTTTTCTT

TTTTTGTT

326

273.0848

57.7395


TCTTTTTT

TTTTTCTT

270

218.9471

56.5898


TTTTCTTT

TTTTTTCT

278

226.8886

56.479


TTTTTTGG

TTTTTGTT

161

116.5969

51.9517


TTATTTTT

TTTTTCTT

211

166.8299

49.5604


TTCTTTTT

TTTTTGTT

290

248.3755

44.9324


TGTTTTTT

TTCTTTTT

239

198.0677

44.8973


TTTTCTTT

TCTTTTTT

270

228.7449

44.7699


TCTTTTTC

TTTTTTCT

112

76.7939

42.2658


TGTTTTTT

TTTTTTGG

129

93.1111

42.0564


TTTTTTGG

TTTTTCTT

148

112.0287

41.2117


TTTTTTCT

TTTTTTGG

128

92.8787

41.0542


TTTTCTTT

TGTTTTTT

265

227.4605

40.4796


TTTGTTTT

TTTTTTGG

170

134.4256

39.9138


TTCTTTTT

TTTTTTGG

136

101.9687

39.1665


TCTTTTTT

TTTTTTGG

127

93.6332

38.7099


TTTTCTTT

TTCTTTTT

285

249.2674

38.1794


TTTTTATT

TTATTTTT

137

103.7794

38.0467


TGTTTTTT

TTTTTTCT

215

180.3272

37.8109


TCTTTTTT

TTTTTTCT

216

181.3431

37.7758


TTTTTGGT

TTTTTGTT

161

127.4072

37.6766


ATTTTTTA

TTTTTCTT

82

53.2457

35.4078


Overrepresented non-overlapping word-pairs detected in the 3'Untranslated Regions of Arabidopsis thaliana. A word-pair is characterized through the two nucleotide sequences associated with it (Word1 and Word2), the number of sequences the pair occurs in (S) as well as the expected number of sequences (ES) and a statistical score symbolizing the overrepresentation of the word-pair in the specific sequence set (S*ln(S/ES)).

Lichtenberg et al. BMC Genomics 2009 10:463   doi:10.1186/1471-2164-10-463

Open Data