Table 2 |
||||
|
Blast hits of L. stagnalis cDNA sequences in the published A. californica EST library |
||||
|
Blast E-value |
Number of L. stagnalis ESTs having a blast hit in A. californica |
Number of A. californica ESTs having a blast hit in L. stagnalis |
||
|
|
||||
|
Blastn |
Tblastx |
Blastn |
Tblastx |
|
|
|
||||
|
1e-20 |
523 (6.8%) |
1629 (21.1%) |
7,200 (3.6%) |
15,801 (7.9%) |
|
|
||||
|
1e-10 |
822 (10.7%) |
1987 (25.8%) |
10,247 (5.1%) |
20,081 (10.1%) |
|
|
||||
|
1e-6 |
981 (12.7%) |
2225 (28.9%) |
12,083 (6.1%) |
23,704 (11.9%) |
|
|
||||
|
1e-3 |
1297 (16.8%) |
2661 (34.5%) |
16,823 (8.4%) |
29,955 (15.0%) |
|
|
||||
|
0.01 |
1555 (20.2%) |
2924 (37.9%) |
26,121 (13.1%) |
37,721 (18.9%) |
|
|
||||
|
0.1 |
3311 (42.9%) |
3766 (48.8%) |
80,725 (40.4%) |
76,575 (38.3%) |
|
|
||||
|
|
||||
|
Total |
7712 |
199,689 |
||
|
|
||||
|
Comparison of blastn (search a nucleotide database using a nucleotide query) and tblastx searches (search translated nucleotide database using a translated nucleotide query). |
||||
|
Feng et al. BMC Genomics 2009 10:451 doi:10.1186/1471-2164-10-451 |
||||
