Table 2

Blast hits of L. stagnalis cDNA sequences in the published A. californica EST library

Blast

E-value

Number of L. stagnalis ESTs having a blast hit in A. californica

Number of A. californica ESTs having a blast hit in L. stagnalis


Blastn

Tblastx

Blastn

Tblastx


1e-20

523 (6.8%)

1629 (21.1%)

7,200 (3.6%)

15,801 (7.9%)


1e-10

822 (10.7%)

1987 (25.8%)

10,247 (5.1%)

20,081 (10.1%)


1e-6

981 (12.7%)

2225 (28.9%)

12,083 (6.1%)

23,704 (11.9%)


1e-3

1297 (16.8%)

2661 (34.5%)

16,823 (8.4%)

29,955 (15.0%)


0.01

1555 (20.2%)

2924 (37.9%)

26,121 (13.1%)

37,721 (18.9%)


0.1

3311 (42.9%)

3766 (48.8%)

80,725 (40.4%)

76,575 (38.3%)



Total

7712

199,689


Comparison of blastn (search a nucleotide database using a nucleotide query) and tblastx searches (search translated nucleotide database using a translated nucleotide query).

Feng et al. BMC Genomics 2009 10:451   doi:10.1186/1471-2164-10-451

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