Additional File 14.

Clusters with and without potentially duplicated markers. Analysis of orthogonal diversity data by "Fanny" routine in statistical package 'R'. Fanny finds fuzzy clusters at a given cluster number, 'K'. These analyses were performed with K = 40 on the complete data set (134 × 1295), and, for comparison, on the same data set with potentially duplicated markers removed (see Additional file 13).

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Tinker et al. BMC Genomics 2009 10:39   doi:10.1186/1471-2164-10-39