BMC Genomics

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Open Access Highly Access Research article

High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs

Nicole AR Walter1,2,3, Daniel Bottomly4,5, Ted Laderas5,6, Michael A Mooney4, Priscila Darakjian2,3, Robert P Searles7, Christina A Harrington6,7, Shannon K McWeeney2,4,5,6,8, Robert Hitzemann1,2,3 and Kari J Buck1,2,3*

Author Affiliations

1 Research and Development Service, Portland VA Medical Center, Portland, OR, USA

2 Portland Alcohol Research Center, Oregon Health & Science University, Portland, OR, USA

3 Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA

4 Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA

5 Oregon Clinical and Translational Research Institute, Oregon Health & Science University, Portland, OR, USA

6 Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USA

7 Gene Microarray Shared Resource, Oregon Health & Science University, Portland, OR, USA

8 Division of Biostatistics in the Department of Public Health and Preventive Medicine, Oregon Health & Science University, Portland, OR, USA

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BMC Genomics 2009, 10:379 doi:10.1186/1471-2164-10-379

Published: 17 August 2009

Additional files

Additional file 1:

D2 BAC probe primer sequences. Custom PCR primer pairs that were used to generate PCR probes to screen MM_DBa BAC library across chromosome 1 region of interest. All primers are listed 5'-3' orientation.

Format: XLS Size: 21KB Download file

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Open Data