Table 2

Summary of the integrated genetic and physical map

Genetic Map

Shotgun Sequence

Physical Map

Linkage

Group

No. mapped

SSR

Markers

Size

(cM)

Estimated Physical

Size (Mbp)

No.

aligned

Scaffolds

Length

(Mbp)

Coverage

No. aligned FPC Ctgs

No. aligned BACs

Length

(CB units)

Estimated Physical

Size (Mbp)

Coverage

LG1

77

145.0

50.48

25

21.97

43.52%

56

1892

15682

25.09

49.70%

LG2

70

138.8

48.32

29

27.07

56.02%

63

2345

18877

30.20

62.50%

LG3

116

132.4

46.09

35

29.89

64.85%

68

2796

22187

35.50

77.02%

LG4

57

120.6

41.98

30

22.07

52.57%

44

1840

13946

22.31

53.14%

LG5

63

103.6

36.07

22

24.33

67.45%

48

2287

17704

28.33

78.54%

LG6

106

100.2

34.88

36

29.42

84.35%

65

2819

21458

34.33

98.42%

LG7

59

96.4

33.56

25

21.36

63.65%

62

2050

17602

28.16

83.91%

LG8+10

72

118.9

41.39

29

27.59

66.66%

64

2502

19538

31.26

75.53%

LG9+11

81

91.3

31.78

22

28.70

90.31%

63

2780

20770

33.23

104.56%

LG12

5

21.4

7.45

2

0.96

12.89%

2

60

453

0.72

9.66%

Total

706

1068.6

372

255

233.37

62.73%

535

21371

168217

269.15

72.35%

Yu et al. BMC Genomics 2009 10:371   doi:10.1186/1471-2164-10-371