Research article
Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications
-
* Corresponding author: Xianhua Dai issdxh@mail.sysu.edu.cn
Electronic Department, Sun Yat-Sen University, Guangzhou, PR China
BMC Genomics 2009, 10:304 doi:10.1186/1471-2164-10-304
Published: 8 July 2009Additional files
Additional file 1:
Table S1. ORF names for the modification cohort genes, positive and negative remodeling cohort genes, targets of remodelers.
Format: XLS Size: 436KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
Table S2. The interactions between chromatin remodeling and histone modifications.
Format: XLS Size: 35KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 3:
Table S3. The interactions between chromatin remodeling and histone modifications using remodeler occupancy data.
Format: XLS Size: 17KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 4:
Table S4. ORF names for the modification-independent cohort genes, remodeling-independent cohort genes, and modification and remodeling cohort genes.
Format: XLS Size: 86KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 5:
Figure S5. Modification levels and gene expression levels accompanying the perturbation of chromatin remodelers for the three gene cohortsMaximum level among the 25 modifications (y-axis) and maximum expression level (log2 transformed and the absolute value taken) accompanying the perturbation of 33 chromatin remodelers (x-axis), are plotted for each gene in modification-independent cohort, remodeling-independent cohort, and modification and remodeling cohort, respectively. Genes assigned to each of the three cohorts are significantly different from each other.
Format: JPEG Size: 175KB Download file
Additional file 6:
Table S6. The K-S P values that evaluate difference in the distribution of gene expression values accompanying the mutation of TFs between the modification cohort genes and the rest of the genes.
Format: XLS Size: 25KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 7:
Table S7. Significance values relating genomic properties to the three cohorts P values for Gene Ontology terms were derived using 'GO term finder' at the Saccharomyces Genome Database.
Format: XLS Size: 29KB Download file
This file can be viewed with: Microsoft Excel Viewer