Table 4

Comparative genomics of P. luminescens vs. P. asymbiotica ATCC43949 showing regions unique to each genome

Locus

Species

Gene Region

Size (Kb)

Products of interest


1

P. luminescens

plu0179-plu0190

8.5

Carbapenem biosynthesis operon

2

P. luminescens

plu0404-plu0419

14.3

Fimbrial proteins, adhesin

3

P. luminescens

plu0525-plu0541

16

Hemolysins

4

P. luminescens

plu0545-plu0549

16.6

Hemolysins

5

P. luminescens

plu0634-plu0643

14.2

Hemolysins, peptidase

6

P. luminescens

plu0751-plu0767

20

Proteins involved in antibiotic synthesis

7

P. luminescens

plu0777-plu0793

18

Fimbrial proteins

8

P. luminescens

plu0802-plu0808

12.8

Tc Insecticidal toxins

9

P. luminescens

plu0887-plu0900

20.7

Pyocins, proteins involved in antibiotic synthesis

10

P. luminescens

plu0917-plu0925

8

Lux-R transcriptional regulators

11

P. luminescens

plu0961-plu0968

29

Tc Insecticidal toxins

12

P. luminescens

plu0991-plu0994

3.7

Adhesin

13

P. luminescens

plu1030-plu1059

27.6

Pili operon

14

P. luminescens

plu1063-plu1113

51

Peptide synthetase, phage, transposable elements

15

P. luminescens

plu1204-plu1224

29.6

Proteins involved in antibiotic synthesis, transposable elements

16

P. luminescens

plu1408-plu1413

6.7

Hemolysins

17

P. luminescens

plu1514-plu1515

2.2

Proteins involved in tetracycline resistance

18

P. luminescens

plu1536-plu1537

1.3

Similar to Bt Insecticidal toxin

19

P. luminescens

plu2188-plu2200

14.1

Proteins involved in antibiotic synthesis

20

P. luminescens

plu2213-plu2223

15.3

Nematicidal protein

21

P. luminescens

plu2903-plu2960

33.6

Phage

22

P. luminescens

plu3124-plu3129

6.2

Proteins involved in toxin secretion

23

P. luminescens

plu3423-plu3489

47.5

Phage

24

P. luminescens

plu3520-plu3535

46.5

Proteins involved in antibiotic synthesis

25

P. luminescens

plu3667-plu3669

2.4

RTX toxins

26

P. luminescens

plu3915-plu3925

13

Proteins involved in antibiotic synthesis

27

P. luminescens

plu4165-plu4175

15.3

Tc Insecticidal toxins TccB1, TccA1, pyocins

28

P. luminescens

plu4182-plu4186

9.1

Tc Insecticidal toxins TccC6

29

P. luminescens

plu4187-plu4197

11.4

Anthraquinone biosynthesis

30

P. luminescens

plu4234-plu4243

10.5

Photopexin A & B

31

P. luminescens

plu4488

2.8

Insecticidal toxins TccC7

32

P. luminescens

plu4621-plu4630

14.6

Siderophore biosynthesis operon

33

P. luminescens

plu4812-plu4830

17.1

Lipopolysaccharide biosynthesis

34

P. asymbiotica

pau00446-pau00458

21.2

Hemolysin, Proteins involved in antibiotic synthesis

35

P. asymbiotica

pau00704-pau00699

8.3

Fucose operon

36

P. asymbiotica

pau00881-pau00897

23.6

Tc Insecticidal toxin TccC3

37

P. asymbiotica

pau00911-pau00921

18.7

Fatty acid biosynthesis operon

38

P. asymbiotica

pau01194-pau01201

16.8

Proteins involved in antibiotic synthesis

39

P. asymbiotica

pau01335-pau01351

20.1

RTX toxins

40

P. asymbiotica

pau02124-pau02142

16.3

Insecticidal toxin TccZ

41

P. asymbiotica

pau02212-pau02264

88.7

Syringomycin synthetase, insecticidal toxin, lectin

42

P. asymbiotica

pau02551

4.6

Similar to syringomycin synthetase

43

P. asymbiotica

pau04327-pau04342

18.3

Lipopolysaccharide biosynthesis


Wilkinson et al. BMC Genomics 2009 10:302   doi:10.1186/1471-2164-10-302

Open Data