Table 1 |
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Genes with or without SD in E. coli K12 |
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|
Number of genes |
Percentage of genes with SD |
Percentage of genes without SD |
|
|
|
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|
All E. coli genes |
4,133 |
69.66 |
30.34 |
|
|
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|
Highly expressed genes (HEG) from E. coli (1) |
253 |
81.03 |
18.97 |
|
|
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|
Horizontally transferred genes (HGT) from E. coli (2) |
310 |
68.39 |
31.61 |
|
|
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Mean and standard deviation of 100 sets of 300 genes randomly selected from E. coli |
300 |
69.04 ± 2.58 |
30.96 ± 2.58 |
|
|
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Number of genes and percentage of genes with the Shine-Dalgarno motif from E. coli K12. (1) HEG extracted from the HEG-DB http://genomes.urv.es/HEG-DB webcite[39] (2) HGT extracted from the HGT-DB http://genomes.urv.es/HGT-DB webcite[40] Abbreviations: SD, Shine-Dalgarno |
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Pallejà et al. BMC Genomics 2009 10:281 doi:10.1186/1471-2164-10-281 |
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