Table 1

Genome organisation of Sipunculus nudus. Complete circular mtDNA has a lenght of 15502 bp.

Gene

Strand

Position

(start – end)

Length

(nuc.)

GC-/AT-

skew

Start-

codon

Stop-

codon

Intergenic bp


cox1

+

1 – 1543

1543

-0.24/-0.07

ATG

TAA

12

trnN

+

1556 – 1624

69

0

cox2

+

1625 – 2319

695

-0.26/-0.07

ATG

TA

0

trnD

+

2320 – 2385

66

0

atp8

+

2386 – 2544

159

-0.38/0.12

ATG

TAG

2

trnY

+

2547 – 2609

63

36

trnE

+

2646 – 2712

67

1

trnG

+

2714 – 2780

67

0

cox3

+

2781 – 3560

780

-0.27/-0.07

ATG

TAA

4

trnQ

+

3565 – 3632

68

0

nad6

+

3633 – 4106

474

-0.34/-0.18

ATG

TAG

1

cob

+

4108 – 5247

1140

-0.30/-0.06

ATG

TAA

7

trnP

+

5255 – 5322

68

0

trnS-UCN

+

5323 – 5389

67

5

trnC

+

5395 – 5455

61

5

trnM

+

5461 – 5527

67

0

rrnS (12S)

+

5528 – 6373

846

-0.23/0.18

0

trnV

+

6374 – 6442

69

0

rrnL (16S)

+

6443 – 7929

1487

-0.26/0.08

0

trnL-CUN

+

7930 – 7995

66

7

trnA

+

8003 – 8070

68

0

trnI

+

8071 – 8139

69

0

trnK

+

8140 – 8207

68

0

nad3

+

8208 – 8565

358

-0.35/-0.05

ATG

T

2

trnF

+

8568 – 8631

64

0

Major NCR

+

8632 – 9072

441

-0.14/0.09

0

trnT

+

9073 – 9142

70

0

nad4L

+

9143 – 9424

282

-0.43/-0.06

ATG

TAA

-7

nad4

+

9418 – 10774

1357

-0.37/-0.02

ATG

T

7

trnL-UUR

+

10782 – 10846

65

0

nad1

+

10847 – 11789

943

-0.32/-0.09

ATG

T

0

trnW

+

11790 – 11855

66

7

atp6

+

11863 – 12550

688

-0.41/-0.14

ATG

T

0

trnR

+

12551 – 12619

69

1

trnH

+

12689 – 12688

68

39

nad5

+

12728 – 12727

1698

-0.37/0.01

ATA

TAA

21

trnS-AGN

+

14447 – 14518

72

-1

nad2

+

14518 – 15502

985

-0.45/-0.13

ATG

T

0


* start and stop position of ribosomal RNA and NCR according to adjacent gene boundaries

Mwinyi et al. BMC Genomics 2009 10:27   doi:10.1186/1471-2164-10-27

Open Data