Table 1 |
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|
Genome organisation of Sipunculus nudus. Complete circular mtDNA has a lenght of 15502 bp. |
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|
Gene |
Strand |
Position (start – end) |
Length (nuc.) |
GC-/AT- skew |
Start- codon |
Stop- codon |
Intergenic bp |
|
|
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|
cox1 |
+ |
1 – 1543 |
1543 |
-0.24/-0.07 |
ATG |
TAA |
12 |
|
trnN |
+ |
1556 – 1624 |
69 |
0 |
|||
|
cox2 |
+ |
1625 – 2319 |
695 |
-0.26/-0.07 |
ATG |
TA |
0 |
|
trnD |
+ |
2320 – 2385 |
66 |
0 |
|||
|
atp8 |
+ |
2386 – 2544 |
159 |
-0.38/0.12 |
ATG |
TAG |
2 |
|
trnY |
+ |
2547 – 2609 |
63 |
36 |
|||
|
trnE |
+ |
2646 – 2712 |
67 |
1 |
|||
|
trnG |
+ |
2714 – 2780 |
67 |
0 |
|||
|
cox3 |
+ |
2781 – 3560 |
780 |
-0.27/-0.07 |
ATG |
TAA |
4 |
|
trnQ |
+ |
3565 – 3632 |
68 |
0 |
|||
|
nad6 |
+ |
3633 – 4106 |
474 |
-0.34/-0.18 |
ATG |
TAG |
1 |
|
cob |
+ |
4108 – 5247 |
1140 |
-0.30/-0.06 |
ATG |
TAA |
7 |
|
trnP |
+ |
5255 – 5322 |
68 |
0 |
|||
|
trnS-UCN |
+ |
5323 – 5389 |
67 |
5 |
|||
|
trnC |
+ |
5395 – 5455 |
61 |
5 |
|||
|
trnM |
+ |
5461 – 5527 |
67 |
0 |
|||
|
rrnS (12S) |
+ |
5528 – 6373 |
846 |
-0.23/0.18 |
0 |
||
|
trnV |
+ |
6374 – 6442 |
69 |
0 |
|||
|
rrnL (16S) |
+ |
6443 – 7929 |
1487 |
-0.26/0.08 |
0 |
||
|
trnL-CUN |
+ |
7930 – 7995 |
66 |
7 |
|||
|
trnA |
+ |
8003 – 8070 |
68 |
0 |
|||
|
trnI |
+ |
8071 – 8139 |
69 |
0 |
|||
|
trnK |
+ |
8140 – 8207 |
68 |
0 |
|||
|
nad3 |
+ |
8208 – 8565 |
358 |
-0.35/-0.05 |
ATG |
T |
2 |
|
trnF |
+ |
8568 – 8631 |
64 |
0 |
|||
|
Major NCR |
+ |
8632 – 9072 |
441 |
-0.14/0.09 |
0 |
||
|
trnT |
+ |
9073 – 9142 |
70 |
0 |
|||
|
nad4L |
+ |
9143 – 9424 |
282 |
-0.43/-0.06 |
ATG |
TAA |
-7 |
|
nad4 |
+ |
9418 – 10774 |
1357 |
-0.37/-0.02 |
ATG |
T |
7 |
|
trnL-UUR |
+ |
10782 – 10846 |
65 |
0 |
|||
|
nad1 |
+ |
10847 – 11789 |
943 |
-0.32/-0.09 |
ATG |
T |
0 |
|
trnW |
+ |
11790 – 11855 |
66 |
7 |
|||
|
atp6 |
+ |
11863 – 12550 |
688 |
-0.41/-0.14 |
ATG |
T |
0 |
|
trnR |
+ |
12551 – 12619 |
69 |
1 |
|||
|
trnH |
+ |
12689 – 12688 |
68 |
39 |
|||
|
nad5 |
+ |
12728 – 12727 |
1698 |
-0.37/0.01 |
ATA |
TAA |
21 |
|
trnS-AGN |
+ |
14447 – 14518 |
72 |
-1 |
|||
|
nad2 |
+ |
14518 – 15502 |
985 |
-0.45/-0.13 |
ATG |
T |
0 |
|
|
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|
* start and stop position of ribosomal RNA and NCR according to adjacent gene boundaries |
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|
Mwinyi et al. BMC Genomics 2009 10:27 doi:10.1186/1471-2164-10-27 |
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