Table 1

'Cand. P. ubique' IGRs longer than 100 bp ranked by GC content. IGRs containing tRNA and rRNA removed

Coordinates

Length

%GC

BLAST Hits

RNA (strand)

Locus Tag

Flanking Gene Name (Strand)

Locus Tag

Flanking Gene Name (strand)


10302–10518

217

48.85

1761

tmRNA (+)

SAR11_0010

thyX (-)

SAR11_0011

COG4696 (-)

649763–649953

191

41.88

1990

glycine

riboswitch (+)

SAR11_0664

membrane prot.(+)

SAR11_0666

gcvT (+)

493521–493664

144

36.81

888

4.5 S RNA

(SRP RNA) (+)

SAR11_506

pheA (+)

SAR11_0507

dnaX (+)

1127293–1127553

261

36.78

127

SAM-II/SAM-V riboswitch (-)

SAR11_1129

bhmt (-)

SAR11_1730

hyp. protein (-)

564786–564910

125

35.2

611

pntA element (+)

SAR11_0573

rpmJ (+)

SAR11_0574

pntA (+)

38796–39447

652

34.51

2475

RNase P

RNA (-)

SAR11_0033

mraZ (-)

SAR11_0034

ybjR (-)

260190–260348

159

33.96

1615

ffh motif (-)

SAR11_2356

ffh (-)

SAR11_0257

dapF (+)

626974–627168

195

33.33

1168

SAR11_0641

recA (+)

SAR11_0642

protease (-)

786467–786574

108

33.33

927

TPP

riboswitch (+)

SAR11_0810

hyp. protein (+)

SAR11_0811

transporter (+)

585015–585135

121

33.06

41

SAR11_0599

COG1729 (+)

SAR11_0600

mesj (+)

498458–498706

249

32.93

2398

glycine

riboswitch (-)

SAR11_0510

glcB (-)

SAR11_0511

accA (+)

622388–622552

165

32.73

1301

SAR11_0636 element (+)

SAR11_0635

hyp. protein (-)

SAR11_0636

hyp protein (+)

1142870–1143031

162

32.1

29

SAR11_1190

COG0659 (-)

SAR11_1191

HIT protein (-)

159067–159166

100

32

25

SAR11_0156

hyp. protein (-)

SAR11_0157

ispA (-)

1292813–1292925

113

31.86

57

SAR11_1357

livF2 (-)

SAR11_1358

livG2 (-)

1120412–1120856

445

31.46

66

SAR11_1164

lipoprotein (-)

SAR11_1165

exonuclease (+)

873155–873283

129

31.01

832

rpsB motif (+)

SAR11_0906

dnaE (+)

SAR11_0907

rpsB (+)

628285–628539

255

30.2

571

SAR11_0642

protease (-)

SAR11_0643

alaS (+)

1005679–1005890

212

30.19

483

SAM-V (+)

SAR11_1029

rplM (-)

SAR11_1030

metY (+)

361353–361571

219

30.14

76

SAR11_0369

grpE (-)

SAR11_0370

HAM1-like

prot. (+)

1125490–1125606

117

29.91

11

SAR11_1171

ordL (-)

SAR11_1172

osmC (-)

1189853–1189956

104

29.81

25

SAR11_1248

hyp. protein (+)

SAR11_1249

hyp. protein (+)

676100–676308

208

28.7

193

SAR11_0691

hyp. protein (-)

SAR11_0692

yajQ (-)

1212757–1212865

109

29.36

22

SAR11_1279

membrane prot. (-)

SAR11_1280

hyp. protein (+)

732778–732938

161

29.19

446

SAM-V (-)

SAR11_0750

mmuM (-)

SAR11_0751

hyp. protein. (-)

57720–58035

316

29.11

25

SAR11_0046

autotransporter (-)

SAR11_0047

transcription regulator (+)

120095–120215

121

28.93

211

bablM

element (+)

SAR11_0108

rnhB (+)

SAR11_0109

babIM (+)

762114–762332

219

28.31

55

SAR11_0784

hyp. protein (+)

SAR11_0785

hyp. protein (+)

834435–834636

202

28.22

42

SAR11_0864

hyp. protein (+)

SAR11_0865

transporter (+)

1164239–1164384

146

28.08

0

SAR11_1216

ecpD (+)

SAR11_1218

sigB (+)

52729–52884

157

28.02

22

SAR11_0042

autotransporter (-)

SAR11_0043

hyp. protein (-)

1297623–1297755

133

27.82

480

rhtB element (-)

SAR11_1362

rhtB (-)

SAR11_1363

hyp. protein (+)

675041–675166

126

27.78

205

SAR11_0690

hyp. protein (-)

SAR11_0691

hyp. protein (-)

762678–763012

335

27.76

76

SAR11_0785

hyp. protein (+)

SAR11_0786

qacH (-)

43688–43789

102

27.4

570

SAR11_0037

rpoD (-)

SAR11_0038

dnaG (-)

791867–792012

146

27.4

125

SAR11_0817

hupA (+)

SAR11_0818

amtB (+)

1132812–1132928

117

27.35

10

SAR11_1178

pstC (-)

SAR11_1179

pstS (-)

1123617–1123934

318

27.04

192

SAR11_1169

hyp. protein (-)

SAR11_1170

hyp. protein (-)

1181972–1182071

100

27

77

SAR11_1238

sfuC (-)

SAR11_1239

hyp. protein (-)

670506–670772

267

26.97

194

SAR11_0685

moeA (-)

SAR11_0686

hyp. protein (-)

1074189–1074359

171

26.9

650

rpsL motif (-)

SAR11_1121

rpsL (-)

SAR11_1122

rpoC (-)

164139–164261

123

26.82

90

SAR11_0160

COG0647G (-)

SAR11_0161

groES (+)

1245732–1245856

125

26.4

37

SAR11_1309

hyp. protein (+)

SAR11_1310

amt (+)


Meyer et al. BMC Genomics 2009 10:268   doi:10.1186/1471-2164-10-268

Open Data