Table 1 |
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|
'Cand. P. ubique' IGRs longer than 100 bp ranked by GC content. IGRs containing tRNA and rRNA removed |
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|
Coordinates |
Length |
%GC |
BLAST Hits |
RNA (strand) |
Locus Tag |
Flanking Gene Name (Strand) |
Locus Tag |
Flanking Gene Name (strand) |
|
|
||||||||
|
10302–10518 |
217 |
48.85 |
1761 |
tmRNA (+) |
SAR11_0010 |
thyX (-) |
SAR11_0011 |
COG4696 (-) |
|
649763–649953 |
191 |
41.88 |
1990 |
glycine riboswitch (+) |
SAR11_0664 |
membrane prot.(+) |
SAR11_0666 |
gcvT (+) |
|
493521–493664 |
144 |
36.81 |
888 |
4.5 S RNA (SRP RNA) (+) |
SAR11_506 |
pheA (+) |
SAR11_0507 |
dnaX (+) |
|
1127293–1127553 |
261 |
36.78 |
127 |
SAM-II/SAM-V riboswitch (-) |
SAR11_1129 |
bhmt (-) |
SAR11_1730 |
hyp. protein (-) |
|
564786–564910 |
125 |
35.2 |
611 |
pntA element (+) |
SAR11_0573 |
rpmJ (+) |
SAR11_0574 |
pntA (+) |
|
38796–39447 |
652 |
34.51 |
2475 |
RNase P RNA (-) |
SAR11_0033 |
mraZ (-) |
SAR11_0034 |
ybjR (-) |
|
260190–260348 |
159 |
33.96 |
1615 |
ffh motif (-) |
SAR11_2356 |
ffh (-) |
SAR11_0257 |
dapF (+) |
|
626974–627168 |
195 |
33.33 |
1168 |
SAR11_0641 |
recA (+) |
SAR11_0642 |
protease (-) |
|
|
786467–786574 |
108 |
33.33 |
927 |
TPP riboswitch (+) |
SAR11_0810 |
hyp. protein (+) |
SAR11_0811 |
transporter (+) |
|
585015–585135 |
121 |
33.06 |
41 |
SAR11_0599 |
COG1729 (+) |
SAR11_0600 |
mesj (+) |
|
|
498458–498706 |
249 |
32.93 |
2398 |
glycine riboswitch (-) |
SAR11_0510 |
glcB (-) |
SAR11_0511 |
accA (+) |
|
622388–622552 |
165 |
32.73 |
1301 |
SAR11_0636 element (+) |
SAR11_0635 |
hyp. protein (-) |
SAR11_0636 |
hyp protein (+) |
|
1142870–1143031 |
162 |
32.1 |
29 |
SAR11_1190 |
COG0659 (-) |
SAR11_1191 |
HIT protein (-) |
|
|
159067–159166 |
100 |
32 |
25 |
SAR11_0156 |
hyp. protein (-) |
SAR11_0157 |
ispA (-) |
|
|
1292813–1292925 |
113 |
31.86 |
57 |
SAR11_1357 |
livF2 (-) |
SAR11_1358 |
livG2 (-) |
|
|
1120412–1120856 |
445 |
31.46 |
66 |
SAR11_1164 |
lipoprotein (-) |
SAR11_1165 |
exonuclease (+) |
|
|
873155–873283 |
129 |
31.01 |
832 |
rpsB motif (+) |
SAR11_0906 |
dnaE (+) |
SAR11_0907 |
rpsB (+) |
|
628285–628539 |
255 |
30.2 |
571 |
SAR11_0642 |
protease (-) |
SAR11_0643 |
alaS (+) |
|
|
1005679–1005890 |
212 |
30.19 |
483 |
SAM-V (+) |
SAR11_1029 |
rplM (-) |
SAR11_1030 |
metY (+) |
|
361353–361571 |
219 |
30.14 |
76 |
SAR11_0369 |
grpE (-) |
SAR11_0370 |
HAM1-like prot. (+) |
|
|
1125490–1125606 |
117 |
29.91 |
11 |
SAR11_1171 |
ordL (-) |
SAR11_1172 |
osmC (-) |
|
|
1189853–1189956 |
104 |
29.81 |
25 |
SAR11_1248 |
hyp. protein (+) |
SAR11_1249 |
hyp. protein (+) |
|
|
676100–676308 |
208 |
28.7 |
193 |
SAR11_0691 |
hyp. protein (-) |
SAR11_0692 |
yajQ (-) |
|
|
1212757–1212865 |
109 |
29.36 |
22 |
SAR11_1279 |
membrane prot. (-) |
SAR11_1280 |
hyp. protein (+) |
|
|
732778–732938 |
161 |
29.19 |
446 |
SAM-V (-) |
SAR11_0750 |
mmuM (-) |
SAR11_0751 |
hyp. protein. (-) |
|
57720–58035 |
316 |
29.11 |
25 |
SAR11_0046 |
autotransporter (-) |
SAR11_0047 |
transcription regulator (+) |
|
|
120095–120215 |
121 |
28.93 |
211 |
bablM element (+) |
SAR11_0108 |
rnhB (+) |
SAR11_0109 |
babIM (+) |
|
762114–762332 |
219 |
28.31 |
55 |
SAR11_0784 |
hyp. protein (+) |
SAR11_0785 |
hyp. protein (+) |
|
|
834435–834636 |
202 |
28.22 |
42 |
SAR11_0864 |
hyp. protein (+) |
SAR11_0865 |
transporter (+) |
|
|
1164239–1164384 |
146 |
28.08 |
0 |
SAR11_1216 |
ecpD (+) |
SAR11_1218 |
sigB (+) |
|
|
52729–52884 |
157 |
28.02 |
22 |
SAR11_0042 |
autotransporter (-) |
SAR11_0043 |
hyp. protein (-) |
|
|
1297623–1297755 |
133 |
27.82 |
480 |
rhtB element (-) |
SAR11_1362 |
rhtB (-) |
SAR11_1363 |
hyp. protein (+) |
|
675041–675166 |
126 |
27.78 |
205 |
SAR11_0690 |
hyp. protein (-) |
SAR11_0691 |
hyp. protein (-) |
|
|
762678–763012 |
335 |
27.76 |
76 |
SAR11_0785 |
hyp. protein (+) |
SAR11_0786 |
qacH (-) |
|
|
43688–43789 |
102 |
27.4 |
570 |
SAR11_0037 |
rpoD (-) |
SAR11_0038 |
dnaG (-) |
|
|
791867–792012 |
146 |
27.4 |
125 |
SAR11_0817 |
hupA (+) |
SAR11_0818 |
amtB (+) |
|
|
1132812–1132928 |
117 |
27.35 |
10 |
SAR11_1178 |
pstC (-) |
SAR11_1179 |
pstS (-) |
|
|
1123617–1123934 |
318 |
27.04 |
192 |
SAR11_1169 |
hyp. protein (-) |
SAR11_1170 |
hyp. protein (-) |
|
|
1181972–1182071 |
100 |
27 |
77 |
SAR11_1238 |
sfuC (-) |
SAR11_1239 |
hyp. protein (-) |
|
|
670506–670772 |
267 |
26.97 |
194 |
SAR11_0685 |
moeA (-) |
SAR11_0686 |
hyp. protein (-) |
|
|
1074189–1074359 |
171 |
26.9 |
650 |
rpsL motif (-) |
SAR11_1121 |
rpsL (-) |
SAR11_1122 |
rpoC (-) |
|
164139–164261 |
123 |
26.82 |
90 |
SAR11_0160 |
COG0647G (-) |
SAR11_0161 |
groES (+) |
|
|
1245732–1245856 |
125 |
26.4 |
37 |
SAR11_1309 |
hyp. protein (+) |
SAR11_1310 |
amt (+) |
|
|
|
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|
Meyer et al. BMC Genomics 2009 10:268 doi:10.1186/1471-2164-10-268 |
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