Table 2

Exon junctions* identified by alignment of the GS FLX reads from the MAQC A and B Samples to the Human Genome compared with RefSeq and AceView

RefSeq

MAQC

AceView


Total Number of Exon Junctions

190,325

137,899

360,517

Number of Exon Junctions not in RefSeq

0

22,193

170,557

Number of Novel Exon Junctions not in RefSeq or AceView

0

8,432

0


*Exon junctions were identified by the requirements that the reads align to the genome separated by standard GT-AG, GC-AG, or AT-AC introns.

Mane et al. BMC Genomics 2009 10:264   doi:10.1186/1471-2164-10-264

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