Research article
Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes
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* Corresponding author: Zhengchang Su zcsu@uncc.edu
Department of Bioinformatics and Genomics, Bioinformatics Research Center, the University of North Carolina at Charlotte, Charlotte, NC 28233, USA
BMC Genomics 2009, 10:23 doi:10.1186/1471-2164-10-23
Published: 15 January 2009Additional files
Additional File 1:
Figure S1. A protein tree containing 202 SyCRP1 orthologues from a wide range of bacterial species. The red-labeled branch is CRPs from cyanobacteria.
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Additional File 2:
Table S1. Putative CRP binding sites used to construct the profile of CRP binding sites. Table S2. Most conserved putative CRP-regulated genes/TUs in 12 cyanobacterial genomes. Table S3–14. Predicted CRP binding sites in 12 cyanobacterial genome at p-value < 0.01.
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Additional File 3:
Figure S2. Genome-wide scanning for CRP-like binding sites in the 17 genomes that do not encode a CRP protein.
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