Additional file 1:

Chlamydomonas metabolites identified by GCxGC-MS. Excel file containing the metabolites found by mass spectronomy[40] together with their ChlamyCyc ID and the description if they were manually included ('added') into ChlamyCyc or part of the initial draft network ('ok').

Format: XLS Size: 40KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Chlamydomonas orthology relationships. Venn diagram for the Chlamydomonas orthology relationships obtained from Inparanoid, OrthoMCL-DB and KEGG-KO (for details main manuscript). The yellow boxes show the total number of ortholog groups per method.

Format: ZIP Size: 4MB Download file

Additional file 3:

Chlamydomonas orthology relationships using Inparanoid. Tab-separated CSV-file containing the Chlamydomonas protein ids and annotated orthologs from Inparanoid [46].

Format: CSV Size: 17.7MB Download file

Additional file 4:

Chlamydomonas orthology relationships from OrthoMCL-DB. Tab-separated CSV-file containing the Chlamydomonas protein ids and annotated orthologs and OrthoMCL-DB [48].

Format: CSV Size: 34KB Download file

Additional file 5:

Chlamydomonas orthology relationships from KEGG-KO. Tab-separated CSV-file containing the Chlamydomonas protein ids and annotated orthologs from KEGG Orthology Database [7].

Format: XLS Size: 53KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 6:

Chlamydomonas transcription factors from PlantTFDB. Excel file containing the Chlamydomonas proteins annotated as transcription factors from [26].

Format: XLS Size: 473KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 7:

Chlamydomonas MapMan annotation. Chlamy_mapman.xls: Excel file containing the Chlamydomonas MapMan annotation.

Format: PPT Size: 212KB Download file

This file can be viewed with: Microsoft PowerPoint Viewer