Table 4 |
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|
Novel zebrafish miRNAs. miRNAs identified in this study, their level of conservation and corresponding miRNA families. |
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|
miRNA ID |
miRNA sequence |
Conservation |
miRNA family |
miRDeep prediction |
Ensembl prediction |
|
|
|||||
|
miR_1 |
AACAGTAAGAGTTTATGTGCTG |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _2 |
CGGTGCAGGACTCCGCGGCTC |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _3 |
AAGTGGCCTCTAAAAGTCTA |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _4 |
TAATACTGCCTGGTAATGCCAT |
Conserved |
miR-429 |
√ |
√ |
|
|
|||||
|
miR _5 |
ATCTCAGGTTCGTCAGCCCATG |
Conserved |
miR-1388 |
√ |
√ |
|
|
|||||
|
miR _6 |
GGCTTGTTTTAAGTTGCCTGCG |
Conserved |
miR-1788 |
√ |
√ |
|
|
|||||
|
miR _7 |
TTACAGGCTATGCTAATCTATG |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _8 |
AAGGTCCAACCTCACATGTCC |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _9 |
TGATTGTTTGTATCAGCTGTGT |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _10 |
TAGGGGTATGATTCTCGC |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _11 |
TAGGTAGTTTGATGTTGTTGGG |
Conserved |
miR-196 |
√ |
√ |
|
|
|||||
|
miR _12 |
CGGCCCGTCCGGTGCGCTCGGAT |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _13 |
TCACACCTACAATCCCTGGCA |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _14 |
AAAGTGAAAGGTGACTGAGAC |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _15 |
TAGGTAGTTTTATGTTGTTGGG |
Conserved |
miR-196 |
√ |
√ |
|
|
|||||
|
miR _16 |
AGCAGCATTGTACAGGGCTTT |
Conserved |
miR-107 |
√ |
√ |
|
|
|||||
|
miR _17 |
GTATGTGCCCTTGGACTACATT |
Conserved |
miR-455 |
No |
√ |
|
|
|||||
|
miR _18 |
TATGTGTGTATCAATTGTGTGAAA |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR_19 |
GTAATGCTTCGACTGATTGGTG |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _20 |
AGATTGGGGTGAGTTAGGGTG |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _21 |
AGCTACATCTGAATACTGGGTCA |
Conserved |
miR-222 |
√ |
√ |
|
|
|||||
|
miR _22 |
CCTCTCTGTGCTGCCATTTGGGAC |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _23 |
ATGATTCGACTCATATGGTG |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR _24 |
AGCTCGTGTCCCAAGGCGCCT |
Non-conserved |
- |
√ |
No |
|
|
|||||
|
miR_25 |
TCGTACCGTGAGTAATAGTGCA |
Conserved |
miR-126 |
No |
√ |
|
|
|||||
|
The novel miRNAs were numbered sequentially from 1 to 25. |
|||||
|
Soares et al. BMC Genomics 2009 10:195 doi:10.1186/1471-2164-10-195 |
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