Research article
Genic regions of a large salamander genome contain long introns and novel genes
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* Corresponding author: S Randal Voss srvoss@uky.edu
1 Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
2 The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
3 Department of Developmental and Cell Biology, University of California Irvine, Irvine, CA 92697, USA
4 The Developmental Biology Center, University of California Irvine, Irvine, CA 92697, USA
5 Roche Applied Science, Indianapolis, IN 46250, USA
6 University of Washington, Department of Genome Sciences, Seattle, WA 98195, USA
7 Benaroya Research Institute at Virginia Mason, Seattle, WA 98101, USA
BMC Genomics 2009, 10:19 doi:10.1186/1471-2164-10-19
Published: 13 January 2009Additional files
Additional file 1:
Comparative data for exons and introns. A table containing exon alignment statistics and corresponding intron lengths for salamander, human, chicken, and frog.
Format: XLS Size: 31KB Download file
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Additional file 2:
Self-self sequence alignments. Plots showing representative self-self sequence alignments for the 4 longest introns that were isolated from A. mexicanum.
Format: DOC Size: 404KB Download file
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Additional file 3:
Alignment of all salamander introns. A plot showing the self-alignment of concatenated intronic sequence sampled from A. mexicanum.
Format: DOC Size: 166KB Download file
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Additional file 4:
miRNAs predicted for axolotl and human. A table containing positional and statistical information for miRNAs predicted for axolotl and human.
Format: XLS Size: 37KB Download file
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Additional file 5:
snoRNAs predicted for axolotl and human. A table containing positional and statistical information for snoRNAs predicted for axolotl and human.
Format: XLS Size: 21KB Download file
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Additional file 6:
Human-axolotl 1: 1 orthologs. A table containing identities and alignment summary statistics for human-axolotl 1: 1 orthologs.
Format: XLS Size: 112KB Download file
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Additional file 7:
Human-axolotl many: many paralogs. A table containing identities and alignment summary statistics for human-axolotl many: many paralogs predicted for both human and axolotl.
Format: XLS Size: 21KB Download file
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Additional file 8:
Human-axolotl many: 1 paralogs. A table containing identities and alignment summary statistics for human-axolotl many: 1 paralogs predicted for both human and axolotl.
Format: XLS Size: 18KB Download file
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Additional file 9:
Human-axolotl 1: many paralogs. A table containing identities and alignment summary statistics for human-axolotl 1: many paralogs predicted for both human and axolotl.
Format: XLS Size: 24KB Download file
This file can be viewed with: Microsoft Excel Viewer