The components of the Daphnia pulex immune system as revealed by complete genome sequencing
- Equal contributors
1 Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK
2 Center for Genomics and Bioinformatics, Indiana University, Bloomington, USA
BMC Genomics 2009, 10:175 doi:10.1186/1471-2164-10-175Published: 22 April 2009
Additional file 1:
Five domain groupings of Scavenger A genes from D. melanogaster (Dmel), A. gambiae (Agam), C. elegans and D. pulex (Dpul). Abbreviations of domains: chitin-binding domain = cbd, scavenger receptor = SCRC (labelled 5' to 3' as A, B or C within a gene copy), low-density lipoprotein = ldl. Vertical lines indicate homologous SCRC domains as shown in phylogenetic tree. Groups 1–4 are all SR-A1, while group 5 is SR-A2 (see text).
Format: JPEG Size: 436KB Download file
Additional file 2:
Bayesian phylogeny of the nitric oxide synthase (NOS) gene from available insect and crustacean sequences, with the three Mus musculus NOS paralogues as outgroup sequences. Numbers at the nodes are posterior probabilities.
Format: JPEG Size: 193KB Download file
Additional file 3:
Accession numbers of all publicly available genes mentioned in manuscript.
Format: XLS Size: 55KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 4:
Gene model sequences constructed by Darren Obbard of Argonaute and Dicer in FASTA format.
Format: TXT Size: 26KB Download file
Additional file 5:
List of Daphnia pulex gene models. For each gene model entry we list the gene name (ID) and coding DNA sequence (SQ). Additionally, under the tag FT, we give the coordinates of the nucleotide sequence to the JGI Daphnia pulex genome sequence, version 060905, unless otherwise noted.
Format: ZIP Size: 93KB Download file