Table 3

Taxa within the Proteobacteria, which attracted at least 1% of the sequences within at least one of the four datasets.

Taxon level

Taxon

D. pulex

D. pulicaria

D. magna GS 20

D. magna GS FLX

Average


Class

Alphaproteobacteria

3.9

8.0

4.5

6.6

5.7


Genus

Rhodobacter

0.4

1.4

2.0

2.8

1.6


Class

Betaproteobacteria

41.9

72.7

63.0

63.5

60.3


Family

Neisseriaceae

0.1

1.2

0.0

0.3

0.4


Genus

Chromobacterium

0.1

1.2

0.0

0.2

0.4


Order

Burkholderiales

41.0

69.5

61.8

61.8

58.5


Genus

Methylibium

2.8

3.9

1.0

1.2

2.2


Family

Alcaligenaceae

0.3

0.6

1.2

1.1

0.8


Genus

Bordetella

0.3

0.4

1.2

1.1

0.7


Family

Burkholderiaceae

1.3

3.0

2.2

1.9

2.1


Genus

Burkholderia

0.3

1.1

0.3

0.3

0.5


Genus

Cupriavidus

0.5

1.0

1.4

1.1

1.0


Family

Comamonadaceae

32.0

56.5

53.0

53.1

48.7


Genus

Acidovorax

9.9

10.5

16.0

16.3

13.2


Genus

Rhodoverax

0.9

4.1

3.2

2.8

2.8


Genus

Polaromonas

3.9

12.8

14.6

14.7

11.5


Genus

Delftia

2.5

5.5

0.2

0.2

2.1


Genus

Verminephrobacter

6.8

4.8

4.4

4.6

5.2


Class

Gammaproteobacteria

53.0

16.8

29.6

27.2

31.6


Genus

Pseudomonas

43.3

11.5

0.8

1.5

14.3


Genus

Serratia

8.6

0.0

0.0

0.0

2.2


Genus

Aeromonas

0.1

3.8

0.0

0.0

1.0


Genus

Escherichia

0.1

0.0

4.6

4.4

2.3


Cell entries are percentages of the number of sequences assigned to the Proteobacteria.

Qi et al. BMC Genomics 2009 10:172   doi:10.1186/1471-2164-10-172

Open Data