Table 1

Characterisation of 64 Daphnia pulex ABC proteins.

Subfamily

Protein ID

Location

Orientation

Size (amino acids)

Predicted topology

EST support ?

Comments


A

346971

2:23668-15376

-

1719

(6TM-NBD)2

Y


312055

5:1495447-1485192

+

1818

(6/7TM-NBD)2

Y


312056

5:1496132–1505498

+

2147

(6TM-NBD)2

Y


347506

101:21050–30661

-

2199

(6TM-NBD)2

N



B

full transporters

347265

8:420953–426161

-

1340

(5/6TM-NBD)2

N


347264

10:634775–640649

+

1293

(5/6TM-NBD)2

Y



half transporters

347270

9:1959479–1964061

-

701

6TM-NBD

Y


347266

23:432954–436338

-

688

3TM-NBD

Y


347268

30:67315–71521

-

835

11TM-NBD

Y

partial


347275

98:485150–488520

+

713

4TM-NBD

Y


347276

213:109133–113467

-

661

5TM-NBD

Y



C

347323

17:1390709–1397174

-

1191

5TM-6TM-6TM-NBD

Y

partial, affected by sequence gaps


347281

74:386519–398940

-

1547

5TM-(5/6TM-NBD)2

Y


347292

75:395095–402681

+

1420

(6/3TM-NBD)2

Y


347295

75:403303–410701

+

1406

(6/4TM-NBD)2

Y


347288

133:190003–199540

-

1246

(3/6TM-NBD)2

Y

partial, affected by sequence gaps


442500

133:231506–240432

+

1584

9TM-(6TM-NBD)2

Y


347548

444:25692–32505

-

1268

(6/3TM-NBD)2

Y

partial



D

347330

15:213474–218223

+

761

2TM-NBD

Y


347326

53:311868–315702

+

604

2TM-NBD

Y


303977

245:28669–31749

-

596

5TM-NBD

Y



E

189585

173:120755–123775

+

610

NBD-NBD

Y



F

304799

3:3598370–3601666

+

613

NBD-NBD

Y


347357

66:238375–242362

-

936

NBD-NBD

Y


347354

113:180264–184281

-

718

NBD-NBD

Y


347363

192:174461–177997

+

596

NBD-NBD

Y



G

312940

7:1643106–1646831

-

628

NBD-7TM

N


347419

7:1650205–1654653

+

619

NBD-6TM

Y


312942

7:1655435–1658770

+

614

NBD-6TM

Y


222011

7:1676572–1680401

+

627

NBD-7TM

Y


312948

7:1681527–1684644

-

602

NBD-7TM

Y


312949

7:1684927–1688387

-

614

NBD-7TM

Y


312950

7:1689092–1692200

+

623

NBD-7TM

Y


312951

7:1692456–1696044

+

628

NBD-7TM

N


347409

12:762775–766127

-

699

NBD-5TM

N


314702

12:765851–769365

-

698

NBD-6TM

Y


347393

12:874106–877816

+

663

NBD-5TM

Y


315707

15:278488–281790

-

663

NBD-6TM

Y


347377

15:281541–286046

-

682

NBD-6TM

Y


347380

15:285548–289633

-

672

NBD-6TM

Y


320906

37:831802–835003

+

630

NBD-7TM

N


320907

37:834846–838359

-

617

NBD-6TM

N


347524

86:126420–129178

+

558

NBD-5TM

N

partial


347412

86:129357–136390

+

637

NBD-6TM

N


327299

89:374068–377567

+

648

NBD-6TM

Y


258299

111:295149–303533

+

949

NBD-7TM

N


347416

131:1–10171

-

727

NBD-5TM

Y

partial, affected by sequence gaps


347444

152:60036–65456

+

674

NBD-6TM

N


347523

1067:1352–4035

-

499

NBD-3TM

N

partial, affected by sequence gaps



H

46780

12:7469–11245

-

761

NBD-7TM

N


99394

12:12278–16254

-

781

NBD-6TM

Y


347465

12:36982–43559

-

766

NBD-5TM

Y


197573

30:1127689–1131913

+

767

NBD-5TM

Y


104532

30:1134028–1137924

+

739

NBD-6TM

N


197993

35:762822–771561

+

783

NBD-5TM

Y


347474

35:773437–778932

+

747

NBD-6TM

Y


347478

88:340140–344680

+

752

NBD-5TM

Y


201766

88:366247–371308

+

752

NBD-7TM

Y


347450

100:55123–59845

-

807

NBD-7TM

Y


328125

100:63078–67060

-

779

NBD-6TM

N


328127

100:72768–77501

-

793

NBD-7TM

Y


228828

121:311724–315411

-

738

NBD-5TM

Y


332183

182:193263–199213

-

801

NBD-6TM

Y


340396

4241:1–6396

+

481

NBD-1TM

N

partial, affected by sequence gaps


The column 'location' gives the scaffold number followed by the position coordinates of the gene model of the given protein ID in v1.1 of the Daphnia pulex draft genome sequence assembly [32].

Sturm et al. BMC Genomics 2009 10:170   doi:10.1186/1471-2164-10-170

Open Data