Table 1 |
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|
Characterisation of 64 Daphnia pulex ABC proteins. |
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|
Subfamily |
Protein ID |
Location |
Orientation |
Size (amino acids) |
Predicted topology |
EST support ? |
Comments |
|
|
|
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|
A |
346971 |
2:23668-15376 |
- |
1719 |
(6TM-NBD)2 |
Y |
||
|
|
||||||||
|
312055 |
5:1495447-1485192 |
+ |
1818 |
(6/7TM-NBD)2 |
Y |
|||
|
|
||||||||
|
312056 |
5:1496132–1505498 |
+ |
2147 |
(6TM-NBD)2 |
Y |
|||
|
|
||||||||
|
347506 |
101:21050–30661 |
- |
2199 |
(6TM-NBD)2 |
N |
|||
|
|
||||||||
|
|
||||||||
|
B |
full transporters |
347265 |
8:420953–426161 |
- |
1340 |
(5/6TM-NBD)2 |
N |
|
|
|
||||||||
|
347264 |
10:634775–640649 |
+ |
1293 |
(5/6TM-NBD)2 |
Y |
|||
|
|
||||||||
|
|
||||||||
|
half transporters |
347270 |
9:1959479–1964061 |
- |
701 |
6TM-NBD |
Y |
||
|
|
||||||||
|
347266 |
23:432954–436338 |
- |
688 |
3TM-NBD |
Y |
|||
|
|
||||||||
|
347268 |
30:67315–71521 |
- |
835 |
11TM-NBD |
Y |
partial |
||
|
|
||||||||
|
347275 |
98:485150–488520 |
+ |
713 |
4TM-NBD |
Y |
|||
|
|
||||||||
|
347276 |
213:109133–113467 |
- |
661 |
5TM-NBD |
Y |
|||
|
|
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|
|
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|
C |
347323 |
17:1390709–1397174 |
- |
1191 |
5TM-6TM-6TM-NBD |
Y |
partial, affected by sequence gaps |
|
|
|
||||||||
|
347281 |
74:386519–398940 |
- |
1547 |
5TM-(5/6TM-NBD)2 |
Y |
|||
|
|
||||||||
|
347292 |
75:395095–402681 |
+ |
1420 |
(6/3TM-NBD)2 |
Y |
|||
|
|
||||||||
|
347295 |
75:403303–410701 |
+ |
1406 |
(6/4TM-NBD)2 |
Y |
|||
|
|
||||||||
|
347288 |
133:190003–199540 |
- |
1246 |
(3/6TM-NBD)2 |
Y |
partial, affected by sequence gaps |
||
|
|
||||||||
|
442500 |
133:231506–240432 |
+ |
1584 |
9TM-(6TM-NBD)2 |
Y |
|||
|
|
||||||||
|
347548 |
444:25692–32505 |
- |
1268 |
(6/3TM-NBD)2 |
Y |
partial |
||
|
|
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|
|
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|
D |
347330 |
15:213474–218223 |
+ |
761 |
2TM-NBD |
Y |
||
|
|
||||||||
|
347326 |
53:311868–315702 |
+ |
604 |
2TM-NBD |
Y |
|||
|
|
||||||||
|
303977 |
245:28669–31749 |
- |
596 |
5TM-NBD |
Y |
|||
|
|
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|
|
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|
E |
189585 |
173:120755–123775 |
+ |
610 |
NBD-NBD |
Y |
||
|
|
||||||||
|
|
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|
F |
304799 |
3:3598370–3601666 |
+ |
613 |
NBD-NBD |
Y |
||
|
|
||||||||
|
347357 |
66:238375–242362 |
- |
936 |
NBD-NBD |
Y |
|||
|
|
||||||||
|
347354 |
113:180264–184281 |
- |
718 |
NBD-NBD |
Y |
|||
|
|
||||||||
|
347363 |
192:174461–177997 |
+ |
596 |
NBD-NBD |
Y |
|||
|
|
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|
|
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|
G |
312940 |
7:1643106–1646831 |
- |
628 |
NBD-7TM |
N |
||
|
|
||||||||
|
347419 |
7:1650205–1654653 |
+ |
619 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
312942 |
7:1655435–1658770 |
+ |
614 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
222011 |
7:1676572–1680401 |
+ |
627 |
NBD-7TM |
Y |
|||
|
|
||||||||
|
312948 |
7:1681527–1684644 |
- |
602 |
NBD-7TM |
Y |
|||
|
|
||||||||
|
312949 |
7:1684927–1688387 |
- |
614 |
NBD-7TM |
Y |
|||
|
|
||||||||
|
312950 |
7:1689092–1692200 |
+ |
623 |
NBD-7TM |
Y |
|||
|
|
||||||||
|
312951 |
7:1692456–1696044 |
+ |
628 |
NBD-7TM |
N |
|||
|
|
||||||||
|
347409 |
12:762775–766127 |
- |
699 |
NBD-5TM |
N |
|||
|
|
||||||||
|
314702 |
12:765851–769365 |
- |
698 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
347393 |
12:874106–877816 |
+ |
663 |
NBD-5TM |
Y |
|||
|
|
||||||||
|
315707 |
15:278488–281790 |
- |
663 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
347377 |
15:281541–286046 |
- |
682 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
347380 |
15:285548–289633 |
- |
672 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
320906 |
37:831802–835003 |
+ |
630 |
NBD-7TM |
N |
|||
|
|
||||||||
|
320907 |
37:834846–838359 |
- |
617 |
NBD-6TM |
N |
|||
|
|
||||||||
|
347524 |
86:126420–129178 |
+ |
558 |
NBD-5TM |
N |
partial |
||
|
|
||||||||
|
347412 |
86:129357–136390 |
+ |
637 |
NBD-6TM |
N |
|||
|
|
||||||||
|
327299 |
89:374068–377567 |
+ |
648 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
258299 |
111:295149–303533 |
+ |
949 |
NBD-7TM |
N |
|||
|
|
||||||||
|
347416 |
131:1–10171 |
- |
727 |
NBD-5TM |
Y |
partial, affected by sequence gaps |
||
|
|
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|
347444 |
152:60036–65456 |
+ |
674 |
NBD-6TM |
N |
|||
|
|
||||||||
|
347523 |
1067:1352–4035 |
- |
499 |
NBD-3TM |
N |
partial, affected by sequence gaps |
||
|
|
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|
|
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|
H |
46780 |
12:7469–11245 |
- |
761 |
NBD-7TM |
N |
||
|
|
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|
99394 |
12:12278–16254 |
- |
781 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
347465 |
12:36982–43559 |
- |
766 |
NBD-5TM |
Y |
|||
|
|
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|
197573 |
30:1127689–1131913 |
+ |
767 |
NBD-5TM |
Y |
|||
|
|
||||||||
|
104532 |
30:1134028–1137924 |
+ |
739 |
NBD-6TM |
N |
|||
|
|
||||||||
|
197993 |
35:762822–771561 |
+ |
783 |
NBD-5TM |
Y |
|||
|
|
||||||||
|
347474 |
35:773437–778932 |
+ |
747 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
347478 |
88:340140–344680 |
+ |
752 |
NBD-5TM |
Y |
|||
|
|
||||||||
|
201766 |
88:366247–371308 |
+ |
752 |
NBD-7TM |
Y |
|||
|
|
||||||||
|
347450 |
100:55123–59845 |
- |
807 |
NBD-7TM |
Y |
|||
|
|
||||||||
|
328125 |
100:63078–67060 |
- |
779 |
NBD-6TM |
N |
|||
|
|
||||||||
|
328127 |
100:72768–77501 |
- |
793 |
NBD-7TM |
Y |
|||
|
|
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|
228828 |
121:311724–315411 |
- |
738 |
NBD-5TM |
Y |
|||
|
|
||||||||
|
332183 |
182:193263–199213 |
- |
801 |
NBD-6TM |
Y |
|||
|
|
||||||||
|
340396 |
4241:1–6396 |
+ |
481 |
NBD-1TM |
N |
partial, affected by sequence gaps |
||
|
|
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|
The column 'location' gives the scaffold number followed by the position coordinates of the gene model of the given protein ID in v1.1 of the Daphnia pulex draft genome sequence assembly [32]. |
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|
Sturm et al. BMC Genomics 2009 10:170 doi:10.1186/1471-2164-10-170 |
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