Table 3

Relative synonymous codon usage (RSCU) and number of codons per 1000 codons (NC1000) in the protein coding genes of the mitochondrial genome of D. pteronyssinus.

Amino acid

codon

RSCU*

NC1000

Amino acid

codon

RSCU

NC1000

Amino acid

codon

RSCU

NC1000

Amino acid

codon

RSCU

NC1000


F

TTC

0.24

14.14

S2

TCA

1.13

15.52

Y

TAC

0.48

11.09

C

TGC

0.33

2.77

TTT

1.76

105.60

TCC

0.43

5.82

TAT

1.52

35.20

TGT

1.67

14.14

L2

TTA

3.43

78.71

TCG

0.14

1.94

W

TGA

1.11

12.75

TTG

0.81

18.57

TCT

3.81

52.11

TGG

0.89

10.25

L1

CTA

0.74

16.91

P

CCA

1.53

14.41

H

CAC

0.50

4.16

R

CGA

1.37

3.88

CTC

0.10

2.22

CCC

0.35

3.33

CAT

1.50

12.47

CGC

0.00

0.00

CTG

0.10

2.22

CCG

0.24

2.22

Q

CAA

1.68

8.59

CGG

0.49

1.39

CTT

0.83

19.12

CCT

1.88

17.74

CAG

0.32

1.66

CGT

2.15

6.10

I

ATC

0.40

16.08

T

ACA

1.33

13.58

N

AAC

0.63

10.53

S1

AGA

0.99

13.58

ATT

1.60

64.30

ACC

0.44

4.43

AAT

1.37

23.00

AGC

0.16

2.22

M

ATA

1.58

57.65

ACG

0.05

0.55

K

AAA

1.67

28.55

AGG

0.61

8.31

ATG

0.42

15.52

ACT

2.18

22.17

AAG

0.33

5.54

AGT

0.73

9.98

V

GTA

1.09

21.06

A

GCA

0.71

4.99

D

GAC

0.69

6.93

G

GGA

0.96

13.86

GTC

0.17

3.33

GCC

0.59

4.16

GAT

1.31

13.03

GGC

0.15

2.22

GTG

0.43

8.31

GCG

0.16

1.11

E

GAA

0.95

10.81

GGG

1.45

21.06

GTT

2.31

44.62

GCT

2.53

17.74

GAG

1.05

11.92

GGT

1.44

20.79


* RSCU is the number of times a particular codon is observed relative to the number of times a codon would be observed in the absence of any codon usage bias [39].

Dermauw et al. BMC Genomics 2009 10:107   doi:10.1186/1471-2164-10-107

Open Data