Table 3 |
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|
Scg5 promoter polymorphisms in C57BL/6J, C57BL/6J-hg/hg, BALB/cByJ, C3H/HeJ, DBA/2J and CAST/EiJ strains |
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|
Strain |
Scg5 exp. |
-2475 (A/G) |
-2445 (A/C) |
-1540 (A/G) |
-1373 (A/G) |
-1095 (G/C) |
-904 (G/T) |
-794 (G/A) |
-659 (A/G) |
-432 (C/T) |
del-432 |
-306 (A/C) |
|
|
||||||||||||
|
C57BL/6J |
LOW |
AA |
AA |
AA |
GG |
GG |
GG |
GG |
AA |
CC |
+ |
AA |
|
C57BL/6J-hg/hg |
LOW |
AA |
AA |
AA |
GG |
GG |
GG |
GG |
AA |
CC |
+ |
AA |
|
BALB/cByJ |
HIGH |
AA |
AA |
AA |
AA |
GG |
GG |
AA |
GG |
del |
del |
N/A |
|
C3H/HeJ |
HIGH |
AA |
AA |
AA |
AA |
GG |
GG |
AA |
GG |
del |
del |
N/A |
|
DBA/2J |
HIGH |
AA |
AA |
AA |
AA |
GG |
GG |
AA |
GG |
del |
del |
N/A |
|
CAST/EiJ |
HIGH |
GG |
CC |
GG |
AA |
CC |
TT |
AA |
GG |
TT |
+ |
CC |
|
|
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|
SNPs are numbered based on position upstream from transcription start site as defined by RefSeq NM_009162,. SNPs with genotypes in bold italics segregate low expressers and high expressers. +, deletion not present in these strains; del, deletion is present in these strains; N/A, genotypes for -306 were not determined for strains with deletion due to the forward primer sequence overlapping the deletion. |
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|
Farber et al. BMC Genetics 2008 9:34 doi:10.1186/1471-2156-9-34 |
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