Table 5 |
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|
List of primers and probes for 14 XRCC1 polymorphisms |
||||
|
Polymorphisms |
Forward primers |
Reverse primers |
VIC probes |
FAM probes |
|
|
||||
|
rs2682586 |
GTCCCAGATTGAGAGAGAGAGAGAT |
CCCGTTCACCTTGAGGACTTG |
CTGAAGGCTCTCTCTCT |
TGAAGGCTCTTTCTCT |
|
rs2682585 |
CTCCCCGTAGGGTGAATGTG |
CTGGTCCCCAGCTTTTATAGGAA |
CAGACCCGCCCCTC |
CAGACCCACCCCTC |
|
rs3213239 |
CACCACCCTGTTTTCTCACCTT |
AGGCCCAACTCCGTCTTG |
CAATGGGCCGGCCGT |
CAAACAACAATGGGCCGT |
|
rs3213245 |
CGCGCTTGCGCACTTTAG |
GCCAGAAGGATGAGGTAGAGTATG |
CCCGCTCCCTCCCA |
CCGCCCCCTCCCA |
|
rs2307187 |
CCCCATACTCTACCTCATCCTTCTG |
GCTGCAGGACACGACATG |
CCGGCATGTCAACGT |
TCCGGCATATCAACGT |
|
rs25496 |
TGGGAATGATGGCTCAGCTTT |
CCTGCTTACCTCATAGTCTTGCT |
ACTGCCCACCAGCAC |
TGCCCGCCAGCAC |
|
rs1799782 |
AGGATGAGAGCGCCAACTC |
ACTCAGGACCCACGTTGTC |
TTGTTGATCCGGCTGAA |
TTGTTGATCCAGCTGAA |
|
rs1799780 |
CCATAGATAGGAGTGAAAGGGTCTTG |
GCTGTGACTATGAAGGGAGAAAGTG |
CAGGATGAGAGGGCTGA |
CAGGATGAGAAGGCTGA |
|
rs915927 |
TCCACTTTCTCCCTTCATAGTCACA |
AGGGTAGCAGCTGCATAGC |
CCAGCGACCCAGCAG |
CCAGCGACCCGGCAG |
|
rs25489 |
CCAGTGGTGCTAACCTAATCTACTCT |
GCTCGGGCAGGGACTG |
CTCCAACTCGTACCCC |
TCCAACTCATACCCC |
|
rs25487 |
GTGGGTGCTGGACTGTCA |
GCAGGGTTGGCGTGTGA |
CCTCCCGGAGGTAA |
CCCTCCCAGAGGTAA |
|
rs3213401 |
GAGTTGGTTCTCATCCAAGA |
AAGATACAGGTGTGGCTCAG |
* |
* |
|
rs2682558 |
CCTTATCCCTGTGTTGGCAAGAG |
GGCTCAGAGGGCCAGAAAA |
CAGATTCCCAGTTCCCT |
CAGATTTCCAGTTCCCT |
|
rs3547 |
TGTGTGTGTGTGTGTGTATAGCA |
GCAGAAGTTACTTCCTCACCATCTC |
CCGCAGGCCTGAAG |
CCGCAAGCCTGAAG |
|
|
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|
Probes are not required because the variant allele involved deletion of 7 nucleotides which is sufficient to be detected by PCR product size. |
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|
Sak et al. BMC Genetics 2007 8:13 doi:10.1186/1471-2156-8-13 |
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