Email updates

Keep up to date with the latest news and content from BMC Genetics and BioMed Central.

Open Access Methodology article

A new set of BXD recombinant inbred lines from advanced intercross populations in mice

Jeremy L Peirce12*, Lu Lu1, Jing Gu, Lee M Silver2 and Robert W Williams1

Author affiliations

1 Center for Neuroscience Department of Anatomy and Neurobiology University of Tennessee Health Science Center 855 Monroe Avenue Memphis, Tennessee 38163 USA

2 Louis Thomas Laboratory Department of Molecular Biology Washington Road Princeton University Princeton, NJ 08544 USA

For all author emails, please log on.

Citation and License

BMC Genetics 2004, 5:7  doi:10.1186/1471-2156-5-7

Published: 29 April 2004

Abstract

Background

Recombinant inbred (RI) strains are an important resource for mapping complex traits in many species. While large RI panels are available for Arabidopsis, maize, C. elegans, and Drosophila, mouse RI panels typically consist of fewer than 30 lines. This is a severe constraint on the power and precision of mapping efforts and greatly hampers analysis of epistatic interactions.

Results

In order to address these limitations and to provide the community with a more effective collaborative RI mapping panel we generated new BXD RI strains from two independent advanced intercrosses (AI) between C57BL/6J (B6) and DBA/2J (D2) progenitor strains. Progeny were intercrossed for 9 to 14 generations before initiating inbreeding, which is still ongoing for some strains. Since this AI base population is highly recombinant, the 46 advanced recombinant inbred (ARI) strains incorporate approximately twice as many recombinations as standard RI strains, a fraction of which are inevitably shared by descent. When combined with the existing BXD RI strains, the merged BXD strain set triples the number of previously available unique recombinations and quadruples the total number of recombinations in the BXD background.

Conclusion

The combined BXD strain set is the largest mouse RI mapping panel. It is a powerful tool for collaborative analysis of quantitative traits and gene function that will be especially useful to study variation in transcriptome and proteome data sets under multiple environments. Additional strains also extend the value of the extensive phenotypic characterization of the previously available strains. A final advantage of expanding the BXD strain set is that both progenitors have been sequenced, and approximately 1.8 million SNPs have been characterized. This provides unprecedented power in screening candidate genes and can reduce the effective length of QTL intervals. It also makes it possible to reverse standard mapping strategies and to explore downstream effects of known sequence variants.