Table 1 |
||||||
|
Ninety microsatellites mapped in Drosophila mojavensis. Microsatellites assigned to chromosome "A" were autosomal but could not be mapped to a particular autosome because of variation segregating within the lines used for mapping. We present the BLAST expect (E) value in the column after the microsatellite name only for the 23 microsatellites used in the Muller's chromosome element comparison. |
||||||
|
Name |
BLAST E-value |
Chromosome |
Size |
Primers |
Repeat motif |
GenBank Accession |
|
|
||||||
|
DMOJX010 |
X |
132 |
attgtgttgcgccttagggc gtgataatttgttgatttgggtgcatgtc |
(ca)11 |
AY578823 |
|
|
DMOJX020 |
X |
142 |
ctctgccactcaacggacc ctcttcagtgttgcctagggtatac |
(ca)7 |
AY578824 |
|
|
DMOJX030 |
X |
124 |
aagctatgcctagttgtcacttcc caaacggcatttcatataagaatctatctcac |
(ag)9 |
AY578825 |
|
|
DMOJX040 |
X |
147 |
aggcatgccttagtttgtgtcac cacacatattaagcattgtattacaatcgtccc |
(ac)15 |
AY578826 |
|
|
DMOJX050 |
X |
143 |
accaagcaaaagccaattgcac caaagctttgccggcattagc |
(ac)12 |
AY578827 |
|
|
DMOJX060 |
X |
128 |
caattgtggagttgcgtttgcac cacgcatttctgattgaccatacac |
(ac)12 |
AY578828 |
|
|
DMOJX070 |
1e-19 |
X |
163 |
gccactcgttgttgtcccta atagttctttgctctatatgcgtgtg |
(ca)4 |
AY578829 |
|
DMOJX080 |
X |
202 |
ccactccacgttcgcttgac cacaatgtagagctccctttaatctcc |
(ac)14 |
AY578830 |
|
|
DMOJX090 |
X |
149 |
ccttcaactttgtcgctccagac caatcaaagcgaacgtagctcaatg |
(ca)9 |
AY578831 |
|
|
DMOJX100 |
X |
160 |
tttgtatataaggcggaaaggcgg gtctgtatataatttaataagttgttacgtaaaagaactcac |
(gt)20 |
AY578832 |
|
|
DMOJX110 |
2e-09 |
X |
98 |
cagtggcgctcaaaaggtctg gggatgtatggggtctatgggtg |
(ca)9 |
AY578833 |
|
DMOJX120 |
X |
110 |
gcctgcatttgtgcatctgc caagtgtttgccaaagctgcag |
(tg)13 |
AY578834 |
|
|
DMOJX130 |
X |
130 |
tgggctacacttcagcaaacattc tcatgtgcaaaggtagccaagc |
(ca)11 |
AY578835 |
|
|
DMOJX500 |
X |
100 |
caattattgcatagccacgccc cgagcacttttccaatttttggc |
(gt)11 |
AY578836 |
|
|
DMOJX501 |
X |
136 |
ctcgagcgaattttcctattggatttc ccaacgagccatttcctcacg |
(ca)6 |
AY578837 |
|
|
DMOJX502 |
X |
107 |
attaaagtgcattaaatgacacagccac ctctgccttcacgtgtgc |
(ca)10 |
AY578838 |
|
|
DMOJX503 |
X |
136 |
gcgaagaattgcaaatacccttgtag aagcaaatatacacaacatacacatgtgc |
(gt)10 |
AY578839 |
|
|
DMOJX504 |
X |
126 |
catcaatctctagaatgcctcacgc gagtgactcactttaaagcgagctc |
(gt)8 |
AY578840 |
|
|
DMOJX505 |
0.004 |
X |
128 |
tcgcttgtttccgtttagtaaccg tacgcgtatgcgtatgcatgc |
(ac)10 |
AY578841 |
|
DMOJX506 |
2e-15 |
X |
149 |
actgcctacactgctctgtctc acaggctttacacatggccaaataac |
(tc)16 |
AY578842 |
|
DMOJX507 |
X |
166 |
ttttctttgcatcggcttagttgc cacatatggaaatgcagcacgaac |
(tc)15 |
AY578843 |
|
|
DMOJX508 |
4e-43 |
X |
248 |
aagcagcctagctgaacagttg cattgggaagagctgatgtatagacg |
(ac)12 |
AY578844 |
|
DMOJX509 |
X |
157 |
agctgattaacgaagcagatttcgtg ttccattcatgaaccactcacacatc |
(ga)18 |
AY578845 |
|
|
DMOJX510 |
X |
169 |
atttggctgctgcgagacg gatttgtgccactgtgcaatgg |
(ag)18 |
AY578846 |
|
|
DMOJX511 |
X |
177 |
gcttcagtgagcctcaaatgaaac tgcagctggcatgggtataag |
(ct)16 |
AY578847 |
|
|
DMOJ2010 |
2 |
157 |
acgagtttgccatgaactggattg aaagccgaaacttgtattcatttggc |
(ac)14 |
AY578848 |
|
|
DMOJ2020 |
2 |
153 |
attgacttagcgtgtgagcgtg cgctgtctcatttacataggtcgg |
(gt)7 |
AY578849 |
|
|
DMOJ2030 |
2 |
199 |
tgacgcgccaatcagttgac gattcaaggtgtcatatctatatgtgtgtagg |
(gt)16 |
AY578850 |
|
|
DMOJ2100 |
4e-05 |
2 |
187 |
ggcgctcccttaatcacagatac agcatgtgtctgcttgctgt |
(ag)17 |
AY578851 |
|
DMOJ2200 |
3e-21 |
2 |
148 |
gtcgctccatagagttctacaagtttg cgcctccaagtaattcacgaagc |
(gt)9 |
AY578852 |
|
DMOJ2210 |
2 |
139 |
cccagcaagtgtactctactcaag tgctgcatcaataaagaaggcaaac |
(ca)8 |
AY578853 |
|
|
DMOJ2220 |
0.002 |
2 |
136 |
gttggctttggctattggactgag tgtgcaatgtgactggcaactg |
(gt)6 |
AY578854 |
|
DMOJ2300 |
1e-05 |
2 |
114 |
aattgacagcactccgtggc gttcagcgccggccttac |
(ca)12 |
AY578855 |
|
DMOJ2301 |
2 |
158 |
ctcttagcggcaggtgtcaag aatcttatcgaaaatatgcaacacgatgg |
(caa)11 |
AY578856 |
|
|
DMOJ2302 |
8e-17 |
2 |
193 |
ctctcgctgtttctcttgtctcttatac aactgatttaccgctcgctatacag |
(ac)9 |
AY578857 |
|
DMOJ3010 |
4e-05 |
3 |
218 |
gcccgccggagttcaatag atgtgtatggccagtgctacattt |
(ct)8 |
AY578858 |
|
DMOJ3020 |
4e-23 |
3 |
94 |
acgtggattacgaacacgagc tttggccaatttgagcaactgc |
(ca)14 |
AY578859 |
|
DMOJ3030 |
3 |
91 |
cctagtttctttggccaccctac cgcagtgaaacgcatggaaac |
(ca)11 |
AY578860 |
|
|
DMOJ3040 |
3 |
94 |
gtcaggtgtcagcagcagc gcctcaacagcacctactgag |
(ac)12 |
AY578861 |
|
|
DMOJ3100 |
3 |
87 |
ctgatttgtcaccacagggactc gctaatcgaagcacacacatgtattcag |
(ca)10 |
AY578862 |
|
|
DMOJ3101 |
7e-25 |
3 |
150 |
aacggcggcatccgttg actgtcatcgcacaaatgatttgta |
(gt)12 |
AY578863 |
|
DMOJ3102 |
3 |
210 |
ctctctgtagcaaaaggcttttgtaacc tgctgtgtgcagcacgaac |
(ca)11 |
AY578864 |
|
|
DMOJ4010 |
4 |
90 |
agccagtgcaatgccagc gcctggaccttgtgggc |
(ca)16 |
AY578865 |
|
|
DMOJ4020 |
4 |
121 |
cagcagctgccttatgtcagc aataaatcgcagcagccaggac |
(ac)10 |
AY578866 |
|
|
DMOJ4030 |
7e-05 |
4 |
137 |
gtagttgttgtaggcacgcataca aatgagaatgagaactggaacggg |
(ca)10 |
AY578867 |
|
DMOJ4040 |
1e-07 |
4 |
161 |
gcaacatgtgctccactcgttc ttttcccacacttcttgcagcag |
(ca)11 |
AY578868 |
|
DMOJ4050 |
4 |
196 |
atcgcatagaaagacactcatacgc ctggaggcaagggaagtttcg |
(ca)9 |
AY578869 |
|
|
DMOJ4060 |
4 |
211 |
cgagactcgctgataagtaaagcc gattgtaattttggccgtgcgc |
(ac)41 |
AY578870 |
|
|
DMOJ4100 |
4 |
126 |
cgcagacatatttgtctcccagc ttcgtagccaagacaaactcacaac |
(ga)11 |
AY578871 |
|
|
DMOJ4200 |
3e-10 |
4 |
120 |
gcttcaagccttgtgatttgttg caagaagaacaagcgcattatgcaaa |
(ct)24 |
AY578872 |
|
DMOJ4300 |
4 |
165 |
ggaaagaataccaacgcctatggc gtccgcagacagccagc |
(ca)12 |
AY578873 |
|
|
DMOJ4301 |
4 |
133 |
acatttggctgttacctggcac ccaatgccagtgagtttctctctc |
(ca)12 |
AY578874 |
|
|
DMOJ4302 |
2e-42 |
4 |
218 |
gtgtgtgcgtggatgtgttttac gacagcactgaacagattatagataagcc |
(ag)18 |
AY578875 |
|
DMOJ4303 |
4 |
174 |
cacggcaacacttgcagttacc ccattgctcatagcccgtttacc |
(ag)23 |
AY578876 |
|
|
DMOJ4304 |
4 |
171 |
ggcacattgccacaagtgtac tctgtgccggaaatcgtcaac |
(ga)20 |
AY578877 |
|
|
DMOJ5010 |
6e-04 |
5 |
117 |
ggcatagggaccgcagc gtaaatattcgccaaacacctacatgc |
(ac)8 |
AY578878 |
|
DMOJ5020 |
4e-06 |
5 |
144 |
ctacaggtatgaagaacctgaaccc acaacagcctacacgcactc |
(gt)11 |
AY578879 |
|
DMOJ5100 |
8e-18 |
5 |
156 |
agacaacttgactgttgctcgc tgacactgattggtcgctgtg |
(gt)8 |
AY578880 |
|
DMOJ5200 |
2e-26 |
5 |
154 |
tcgcacaactggcgcatg atttttacagcacgcttaacaagaattttcac |
(ca)13 |
AY578881 |
|
DMOJ5300 |
5 |
97 |
gtggtggacatcaaccagcc tgagccaactttgagcataaattagcc |
(ca)9 |
AY578882 |
|
|
DMOJ5400 |
5e-08 |
5 |
109 |
cttggatttcagctcagtcgctc cgccacaatcagtcataggtcc |
(gt)10 |
AY578883 |
|
DMOJ5500 |
5 |
121 |
ggaagcgtcgactgcatacc gtgttgaaacgtatgtgtttgtgcc |
(ca)10 |
AY578884 |
|
|
DMOJ5501 |
1e-04 |
5 |
99 |
cgtgccacgtaaactcttgcc gaaggcaattcaattagttttgagagttatccc |
(ac)9 |
AY578885 |
|
DMOJ5502 |
5 |
115 |
gcatattgacaaggacgagctgtc tctgagtgcgtccattactttgtatc |
(gt)12 |
AY578886 |
|
|
DMOJ5503 |
5 |
150 |
gtatacgacatgttggcactgcc ttgcaagctgggcgtaagc |
(tg)10 |
AY578887 |
|
|
DMOJA500 |
A |
185 |
gagactgtttgacgcccgc tcgatagacatgagtttggtctagaaacc |
(tg)8 |
AY578888 |
|
|
DMOJA501 |
A |
140 |
tcagtagcctctgctacggc cgaacggaaattatgaactagtcagcc |
(tc)30 |
AY578889 |
|
|
DMOJA502 |
A |
138 |
ctgaaagttctggcagcaagagt gtgtaatttagttgttagacgcgattgagag |
(ct)14 |
AY578890 |
|
|
DMOJA503 |
A |
153 |
taaggctctgtttcgtaactttgcc ctgtcaatgtgctaaacattgcaacc |
(ca)9 |
AY578891 |
|
|
DMOJA504 |
A |
222 |
aatcatctgccccctttccac ggaaaatgatgctcaggcaggt |
(ac)13 |
AY578892 |
|
|
DMOJA505 |
A |
181 |
ccatagtgcgatgcacgcttc gccatagcccatagtagccaag |
(tg)10 |
AY578893 |
|
|
DMOJA506 |
A |
147 |
attaatgcaggccggaaagtcg gctcgctctgcgtcgttatg |
(gt)11 |
AY578894 |
|
|
DMOJA507 |
A |
134 |
tcagccgggatgttaactaacttg atgcttaccagagcgaatggc |
(ac)12 |
AY578895 |
|
|
DMOJA508 |
A |
196 |
ctctgcgacatgtagactacgc gataaagttgaacttttactaccgatgcattc |
(tg)10 |
AY578896 |
|
|
DMOJA509 |
A |
186 |
gctgagaaacaaatttcgcatgcc tgttgttgtcctttaacgaacgttcc |
(tg)18 |
AY578897 |
|
|
DMOJA510 |
A |
105 |
cacacagccagacttgacgttag gcttttgattttgtcatagccattgctaaac |
(tg)12 |
AY578898 |
|
|
DMOJA511 |
A |
162 |
cttttctggctattacgagagcagc aaaacataatgtaattgagctgacaaagcaac |
(tg)30 |
AY578899 |
|
|
DMOJA512 |
A |
120 |
gatgagaaataggcgttgctgtcc gcatatgatgaaggctgagagctc |
(ca)11 |
AY578900 |
|
|
DMOJA513 |
A |
120 |
gctcagctaacagaaacaccca gccgtagctgcagcatct |
(tg)13 |
AY578901 |
|
|
DMOJA514 |
A |
125 |
atggcgcaactcggtcg gcagcacatttggctgctg |
(gt)12 |
AY578902 |
|
|
DMOJA515 |
A |
203 |
gaccgaacagcgcagcc cacaaacctacataaacaccgcagtc |
(ac)11 |
AY578903 |
|
|
DMOJA516 |
A |
163 |
ggctgtaccaagcacacactc cgctcgtgtcgtcgtcttc |
(ca)13 |
AY578904 |
|
|
DMOJA517 |
A |
87 |
gaaaacagctgcaaacccgtaaag gctctcttaagcgctcaactatatagac |
(ca)15 |
AY578905 |
|
|
DMOJA518 |
A |
118 |
gtatgtatgggcatacagcggg cttggttctatgatatgatgacgtgtct |
(ca)7 |
AY578906 |
|
|
DMOJA519 |
A |
182 |
atgaataggaatccagccagcg agcgctttgcgtgcctac |
(ca)14 |
AY578907 |
|
|
DMOJA520 |
A |
164 |
tttcggcgcaaggtcgtc ttagcttctttaccggcatcatgc |
(gt)8 |
AY578908 |
|
|
DMOJA521 |
A |
96 |
ttttgtttaggttttgcgcctaacc ttttccataatttgtgcgtgtgcc |
(ac)9 |
AY578909 |
|
|
DMOJA522 |
A |
122 |
cctttcgagtgcctccacaac gtcccactacatattgctacagctg |
(ca)11 |
AY578910 |
|
|
DMOJA523 |
A |
147 |
gcgtaagcacagttggactctc tgtctgcggagttttatgctgtaa |
(ct)23 |
AY578911 |
|
|
DMOJA524 |
A |
135 |
tcgagagagattcgatcgagagc cctgtttgcattatgtgggtgtc |
(ac)12 |
AY578912 |
|
|
|
||||||
|
Staten et al. BMC Genetics 2004 5:12 doi:10.1186/1471-2156-5-12 |
||||||
