Table 1

Ninety microsatellites mapped in Drosophila mojavensis. Microsatellites assigned to chromosome "A" were autosomal but could not be mapped to a particular autosome because of variation segregating within the lines used for mapping. We present the BLAST expect (E) value in the column after the microsatellite name only for the 23 microsatellites used in the Muller's chromosome element comparison.
Name
 BLAST E-value
 Chromosome
 Size
 Primers
 Repeat motif
 GenBank Accession
DMOJX010
X
 132
 attgtgttgcgccttagggc
gtgataatttgttgatttgggtgcatgtc
 (ca)11
 AY578823
DMOJX020
X
 142
 ctctgccactcaacggacc
ctcttcagtgttgcctagggtatac
 (ca)7
 AY578824
DMOJX030
X
 124
 aagctatgcctagttgtcacttcc
caaacggcatttcatataagaatctatctcac
 (ag)9
 AY578825
DMOJX040
X
 147
 aggcatgccttagtttgtgtcac
cacacatattaagcattgtattacaatcgtccc
 (ac)15
 AY578826
DMOJX050
X
 143
 accaagcaaaagccaattgcac
caaagctttgccggcattagc
 (ac)12
 AY578827
DMOJX060
X
 128
 caattgtggagttgcgtttgcac
cacgcatttctgattgaccatacac
 (ac)12
 AY578828
DMOJX070
 1e-19
 X
 163
 gccactcgttgttgtcccta
atagttctttgctctatatgcgtgtg
 (ca)4
 AY578829
DMOJX080
X
 202
 ccactccacgttcgcttgac
cacaatgtagagctccctttaatctcc
 (ac)14
 AY578830
DMOJX090
X
 149
 ccttcaactttgtcgctccagac
caatcaaagcgaacgtagctcaatg
 (ca)9
 AY578831
DMOJX100
X
 160
 tttgtatataaggcggaaaggcgg
gtctgtatataatttaataagttgttacgtaaaagaactcac
 (gt)20
 AY578832
DMOJX110
 2e-09
 X
 98
 cagtggcgctcaaaaggtctg
gggatgtatggggtctatgggtg
 (ca)9
 AY578833
DMOJX120
X
 110
 gcctgcatttgtgcatctgc
caagtgtttgccaaagctgcag
 (tg)13
 AY578834
DMOJX130
X
 130
 tgggctacacttcagcaaacattc
tcatgtgcaaaggtagccaagc
 (ca)11
 AY578835
DMOJX500
X
 100
 caattattgcatagccacgccc
cgagcacttttccaatttttggc
 (gt)11
 AY578836
DMOJX501
X
 136
 ctcgagcgaattttcctattggatttc
ccaacgagccatttcctcacg
 (ca)6
 AY578837
DMOJX502
X
 107
 attaaagtgcattaaatgacacagccac
ctctgccttcacgtgtgc
 (ca)10
 AY578838
DMOJX503
X
 136
 gcgaagaattgcaaatacccttgtag
aagcaaatatacacaacatacacatgtgc
 (gt)10
 AY578839
DMOJX504
X
 126
 catcaatctctagaatgcctcacgc
gagtgactcactttaaagcgagctc
 (gt)8
 AY578840
DMOJX505
 0.004
 X
 128
 tcgcttgtttccgtttagtaaccg
tacgcgtatgcgtatgcatgc
 (ac)10
 AY578841
DMOJX506
 2e-15
 X
 149
 actgcctacactgctctgtctc
acaggctttacacatggccaaataac
 (tc)16
 AY578842
DMOJX507
X
 166
 ttttctttgcatcggcttagttgc
cacatatggaaatgcagcacgaac
 (tc)15
 AY578843
DMOJX508
 4e-43
 X
 248
 aagcagcctagctgaacagttg
cattgggaagagctgatgtatagacg
 (ac)12
 AY578844
DMOJX509
X
 157
 agctgattaacgaagcagatttcgtg
ttccattcatgaaccactcacacatc
 (ga)18
 AY578845
DMOJX510
X
 169
 atttggctgctgcgagacg
gatttgtgccactgtgcaatgg
 (ag)18
 AY578846
DMOJX511
X
 177
 gcttcagtgagcctcaaatgaaac
tgcagctggcatgggtataag
 (ct)16
 AY578847
DMOJ2010
2
 157
 acgagtttgccatgaactggattg
aaagccgaaacttgtattcatttggc
 (ac)14
 AY578848
DMOJ2020
2
 153
 attgacttagcgtgtgagcgtg
cgctgtctcatttacataggtcgg
 (gt)7
 AY578849
DMOJ2030
2
 199
 tgacgcgccaatcagttgac
gattcaaggtgtcatatctatatgtgtgtagg
 (gt)16
 AY578850
DMOJ2100
 4e-05
 2
 187
 ggcgctcccttaatcacagatac
agcatgtgtctgcttgctgt
 (ag)17
 AY578851
DMOJ2200
 3e-21
 2
 148
 gtcgctccatagagttctacaagtttg
cgcctccaagtaattcacgaagc
 (gt)9
 AY578852
DMOJ2210
2
 139
 cccagcaagtgtactctactcaag
tgctgcatcaataaagaaggcaaac
 (ca)8
 AY578853
DMOJ2220
 0.002
 2
 136
 gttggctttggctattggactgag
tgtgcaatgtgactggcaactg
 (gt)6
 AY578854
DMOJ2300
 1e-05
 2
 114
 aattgacagcactccgtggc
gttcagcgccggccttac
 (ca)12
 AY578855
DMOJ2301
2
 158
 ctcttagcggcaggtgtcaag
aatcttatcgaaaatatgcaacacgatgg
 (caa)11
 AY578856
DMOJ2302
 8e-17
 2
 193
 ctctcgctgtttctcttgtctcttatac
aactgatttaccgctcgctatacag
 (ac)9
 AY578857
DMOJ3010
 4e-05
 3
 218
 gcccgccggagttcaatag
atgtgtatggccagtgctacattt
 (ct)8
 AY578858
DMOJ3020
 4e-23
 3
 94
 acgtggattacgaacacgagc
tttggccaatttgagcaactgc
 (ca)14
 AY578859
DMOJ3030
3
 91
 cctagtttctttggccaccctac
cgcagtgaaacgcatggaaac
 (ca)11
 AY578860
DMOJ3040
3
 94
 gtcaggtgtcagcagcagc
gcctcaacagcacctactgag
 (ac)12
 AY578861
DMOJ3100
3
 87
 ctgatttgtcaccacagggactc
gctaatcgaagcacacacatgtattcag
 (ca)10
 AY578862
DMOJ3101
 7e-25
 3
 150
 aacggcggcatccgttg
actgtcatcgcacaaatgatttgta
 (gt)12
 AY578863
DMOJ3102
3
 210
 ctctctgtagcaaaaggcttttgtaacc
tgctgtgtgcagcacgaac
 (ca)11
 AY578864
DMOJ4010
4
 90
 agccagtgcaatgccagc
gcctggaccttgtgggc
 (ca)16
 AY578865
DMOJ4020
4
 121
 cagcagctgccttatgtcagc
aataaatcgcagcagccaggac
 (ac)10
 AY578866
DMOJ4030
 7e-05
 4
 137
 gtagttgttgtaggcacgcataca
aatgagaatgagaactggaacggg
 (ca)10
 AY578867
DMOJ4040
 1e-07
 4
 161
 gcaacatgtgctccactcgttc
ttttcccacacttcttgcagcag
 (ca)11
 AY578868
DMOJ4050
4
 196
 atcgcatagaaagacactcatacgc
ctggaggcaagggaagtttcg
 (ca)9
 AY578869
DMOJ4060
4
 211
 cgagactcgctgataagtaaagcc
gattgtaattttggccgtgcgc
 (ac)41
 AY578870
DMOJ4100
4
 126
 cgcagacatatttgtctcccagc
ttcgtagccaagacaaactcacaac
 (ga)11
 AY578871
DMOJ4200
 3e-10
 4
 120
 gcttcaagccttgtgatttgttg
caagaagaacaagcgcattatgcaaa
 (ct)24
 AY578872
DMOJ4300
4
 165
 ggaaagaataccaacgcctatggc
gtccgcagacagccagc
 (ca)12
 AY578873
DMOJ4301
4
 133
 acatttggctgttacctggcac
ccaatgccagtgagtttctctctc
 (ca)12
 AY578874
DMOJ4302
 2e-42
 4
 218
 gtgtgtgcgtggatgtgttttac
gacagcactgaacagattatagataagcc
 (ag)18
 AY578875
DMOJ4303
4
 174
 cacggcaacacttgcagttacc
ccattgctcatagcccgtttacc
 (ag)23
 AY578876
DMOJ4304
4
 171
 ggcacattgccacaagtgtac
tctgtgccggaaatcgtcaac
 (ga)20
 AY578877
DMOJ5010
 6e-04
 5
 117
 ggcatagggaccgcagc
gtaaatattcgccaaacacctacatgc
 (ac)8
 AY578878
DMOJ5020
 4e-06
 5
 144
 ctacaggtatgaagaacctgaaccc
acaacagcctacacgcactc
 (gt)11
 AY578879
DMOJ5100
 8e-18
 5
 156
 agacaacttgactgttgctcgc
tgacactgattggtcgctgtg
 (gt)8
 AY578880
DMOJ5200
 2e-26
 5
 154
 tcgcacaactggcgcatg
atttttacagcacgcttaacaagaattttcac
 (ca)13
 AY578881
DMOJ5300
5
 97
 gtggtggacatcaaccagcc
tgagccaactttgagcataaattagcc
 (ca)9
 AY578882
DMOJ5400
 5e-08
 5
 109
 cttggatttcagctcagtcgctc
cgccacaatcagtcataggtcc
 (gt)10
 AY578883
DMOJ5500
5
 121
 ggaagcgtcgactgcatacc
gtgttgaaacgtatgtgtttgtgcc
 (ca)10
 AY578884
DMOJ5501
 1e-04
 5
 99
 cgtgccacgtaaactcttgcc
gaaggcaattcaattagttttgagagttatccc
 (ac)9
 AY578885
DMOJ5502
5
 115
 gcatattgacaaggacgagctgtc
tctgagtgcgtccattactttgtatc
 (gt)12
 AY578886
DMOJ5503
5
 150
 gtatacgacatgttggcactgcc
ttgcaagctgggcgtaagc
 (tg)10
 AY578887
DMOJA500
A
 185
 gagactgtttgacgcccgc
tcgatagacatgagtttggtctagaaacc
 (tg)8
 AY578888
DMOJA501
A
 140
 tcagtagcctctgctacggc
cgaacggaaattatgaactagtcagcc
 (tc)30
 AY578889
DMOJA502
A
 138
 ctgaaagttctggcagcaagagt
gtgtaatttagttgttagacgcgattgagag
 (ct)14
 AY578890
DMOJA503
A
 153
 taaggctctgtttcgtaactttgcc
ctgtcaatgtgctaaacattgcaacc
 (ca)9
 AY578891
DMOJA504
A
 222
 aatcatctgccccctttccac
ggaaaatgatgctcaggcaggt
 (ac)13
 AY578892
DMOJA505
A
 181
 ccatagtgcgatgcacgcttc
gccatagcccatagtagccaag
 (tg)10
 AY578893
DMOJA506
A
 147
 attaatgcaggccggaaagtcg
gctcgctctgcgtcgttatg
 (gt)11
 AY578894
DMOJA507
A
 134
 tcagccgggatgttaactaacttg
atgcttaccagagcgaatggc
 (ac)12
 AY578895
DMOJA508
A
 196
 ctctgcgacatgtagactacgc
gataaagttgaacttttactaccgatgcattc
 (tg)10
 AY578896
DMOJA509
A
 186
 gctgagaaacaaatttcgcatgcc
tgttgttgtcctttaacgaacgttcc
 (tg)18
 AY578897
DMOJA510
A
 105
 cacacagccagacttgacgttag
gcttttgattttgtcatagccattgctaaac
 (tg)12
 AY578898
DMOJA511
A
 162
 cttttctggctattacgagagcagc
aaaacataatgtaattgagctgacaaagcaac
 (tg)30
 AY578899
DMOJA512
A
 120
 gatgagaaataggcgttgctgtcc
gcatatgatgaaggctgagagctc
 (ca)11
 AY578900
DMOJA513
A
 120
 gctcagctaacagaaacaccca
gccgtagctgcagcatct
 (tg)13
 AY578901
DMOJA514
A
 125
 atggcgcaactcggtcg
gcagcacatttggctgctg
 (gt)12
 AY578902
DMOJA515
A
 203
 gaccgaacagcgcagcc
cacaaacctacataaacaccgcagtc
 (ac)11
 AY578903
DMOJA516
A
 163
 ggctgtaccaagcacacactc
cgctcgtgtcgtcgtcttc
 (ca)13
 AY578904
DMOJA517
A
 87
 gaaaacagctgcaaacccgtaaag
gctctcttaagcgctcaactatatagac
 (ca)15
 AY578905
DMOJA518
A
 118
 gtatgtatgggcatacagcggg
cttggttctatgatatgatgacgtgtct
 (ca)7
 AY578906
DMOJA519
A
 182
 atgaataggaatccagccagcg
agcgctttgcgtgcctac
 (ca)14
 AY578907
DMOJA520
A
 164
 tttcggcgcaaggtcgtc
ttagcttctttaccggcatcatgc
 (gt)8
 AY578908
DMOJA521
A
 96
 ttttgtttaggttttgcgcctaacc
ttttccataatttgtgcgtgtgcc
 (ac)9
 AY578909
DMOJA522
A
 122
 cctttcgagtgcctccacaac
gtcccactacatattgctacagctg
 (ca)11
 AY578910
DMOJA523
A
 147
 gcgtaagcacagttggactctc
tgtctgcggagttttatgctgtaa
 (ct)23
 AY578911
DMOJA524
A
 135
 tcgagagagattcgatcgagagc
cctgtttgcattatgtgggtgtc
 (ac)12
 AY578912

Staten et al. BMC Genetics 2004 5:12   doi:10.1186/1471-2156-5-12