Table 1

Ninety microsatellites mapped in Drosophila mojavensis. Microsatellites assigned to chromosome "A" were autosomal but could not be mapped to a particular autosome because of variation segregating within the lines used for mapping. We present the BLAST expect (E) value in the column after the microsatellite name only for the 23 microsatellites used in the Muller's chromosome element comparison.

Name

BLAST E-value

Chromosome

Size

Primers

Repeat motif

GenBank Accession


DMOJX010

X

132

attgtgttgcgccttagggc

gtgataatttgttgatttgggtgcatgtc

(ca)11

AY578823

DMOJX020

X

142

ctctgccactcaacggacc

ctcttcagtgttgcctagggtatac

(ca)7

AY578824

DMOJX030

X

124

aagctatgcctagttgtcacttcc

caaacggcatttcatataagaatctatctcac

(ag)9

AY578825

DMOJX040

X

147

aggcatgccttagtttgtgtcac

cacacatattaagcattgtattacaatcgtccc

(ac)15

AY578826

DMOJX050

X

143

accaagcaaaagccaattgcac

caaagctttgccggcattagc

(ac)12

AY578827

DMOJX060

X

128

caattgtggagttgcgtttgcac

cacgcatttctgattgaccatacac

(ac)12

AY578828

DMOJX070

1e-19

X

163

gccactcgttgttgtcccta

atagttctttgctctatatgcgtgtg

(ca)4

AY578829

DMOJX080

X

202

ccactccacgttcgcttgac

cacaatgtagagctccctttaatctcc

(ac)14

AY578830

DMOJX090

X

149

ccttcaactttgtcgctccagac

caatcaaagcgaacgtagctcaatg

(ca)9

AY578831

DMOJX100

X

160

tttgtatataaggcggaaaggcgg

gtctgtatataatttaataagttgttacgtaaaagaactcac

(gt)20

AY578832

DMOJX110

2e-09

X

98

cagtggcgctcaaaaggtctg

gggatgtatggggtctatgggtg

(ca)9

AY578833

DMOJX120

X

110

gcctgcatttgtgcatctgc

caagtgtttgccaaagctgcag

(tg)13

AY578834

DMOJX130

X

130

tgggctacacttcagcaaacattc

tcatgtgcaaaggtagccaagc

(ca)11

AY578835

DMOJX500

X

100

caattattgcatagccacgccc

cgagcacttttccaatttttggc

(gt)11

AY578836

DMOJX501

X

136

ctcgagcgaattttcctattggatttc

ccaacgagccatttcctcacg

(ca)6

AY578837

DMOJX502

X

107

attaaagtgcattaaatgacacagccac

ctctgccttcacgtgtgc

(ca)10

AY578838

DMOJX503

X

136

gcgaagaattgcaaatacccttgtag

aagcaaatatacacaacatacacatgtgc

(gt)10

AY578839

DMOJX504

X

126

catcaatctctagaatgcctcacgc

gagtgactcactttaaagcgagctc

(gt)8

AY578840

DMOJX505

0.004

X

128

tcgcttgtttccgtttagtaaccg

tacgcgtatgcgtatgcatgc

(ac)10

AY578841

DMOJX506

2e-15

X

149

actgcctacactgctctgtctc

acaggctttacacatggccaaataac

(tc)16

AY578842

DMOJX507

X

166

ttttctttgcatcggcttagttgc

cacatatggaaatgcagcacgaac

(tc)15

AY578843

DMOJX508

4e-43

X

248

aagcagcctagctgaacagttg

cattgggaagagctgatgtatagacg

(ac)12

AY578844

DMOJX509

X

157

agctgattaacgaagcagatttcgtg

ttccattcatgaaccactcacacatc

(ga)18

AY578845

DMOJX510

X

169

atttggctgctgcgagacg

gatttgtgccactgtgcaatgg

(ag)18

AY578846

DMOJX511

X

177

gcttcagtgagcctcaaatgaaac

tgcagctggcatgggtataag

(ct)16

AY578847

DMOJ2010

2

157

acgagtttgccatgaactggattg

aaagccgaaacttgtattcatttggc

(ac)14

AY578848

DMOJ2020

2

153

attgacttagcgtgtgagcgtg

cgctgtctcatttacataggtcgg

(gt)7

AY578849

DMOJ2030

2

199

tgacgcgccaatcagttgac

gattcaaggtgtcatatctatatgtgtgtagg

(gt)16

AY578850

DMOJ2100

4e-05

2

187

ggcgctcccttaatcacagatac

agcatgtgtctgcttgctgt

(ag)17

AY578851

DMOJ2200

3e-21

2

148

gtcgctccatagagttctacaagtttg

cgcctccaagtaattcacgaagc

(gt)9

AY578852

DMOJ2210

2

139

cccagcaagtgtactctactcaag

tgctgcatcaataaagaaggcaaac

(ca)8

AY578853

DMOJ2220

0.002

2

136

gttggctttggctattggactgag

tgtgcaatgtgactggcaactg

(gt)6

AY578854

DMOJ2300

1e-05

2

114

aattgacagcactccgtggc

gttcagcgccggccttac

(ca)12

AY578855

DMOJ2301

2

158

ctcttagcggcaggtgtcaag

aatcttatcgaaaatatgcaacacgatgg

(caa)11

AY578856

DMOJ2302

8e-17

2

193

ctctcgctgtttctcttgtctcttatac

aactgatttaccgctcgctatacag

(ac)9

AY578857

DMOJ3010

4e-05

3

218

gcccgccggagttcaatag

atgtgtatggccagtgctacattt

(ct)8

AY578858

DMOJ3020

4e-23

3

94

acgtggattacgaacacgagc

tttggccaatttgagcaactgc

(ca)14

AY578859

DMOJ3030

3

91

cctagtttctttggccaccctac

cgcagtgaaacgcatggaaac

(ca)11

AY578860

DMOJ3040

3

94

gtcaggtgtcagcagcagc

gcctcaacagcacctactgag

(ac)12

AY578861

DMOJ3100

3

87

ctgatttgtcaccacagggactc

gctaatcgaagcacacacatgtattcag

(ca)10

AY578862

DMOJ3101

7e-25

3

150

aacggcggcatccgttg

actgtcatcgcacaaatgatttgta

(gt)12

AY578863

DMOJ3102

3

210

ctctctgtagcaaaaggcttttgtaacc

tgctgtgtgcagcacgaac

(ca)11

AY578864

DMOJ4010

4

90

agccagtgcaatgccagc

gcctggaccttgtgggc

(ca)16

AY578865

DMOJ4020

4

121

cagcagctgccttatgtcagc

aataaatcgcagcagccaggac

(ac)10

AY578866

DMOJ4030

7e-05

4

137

gtagttgttgtaggcacgcataca

aatgagaatgagaactggaacggg

(ca)10

AY578867

DMOJ4040

1e-07

4

161

gcaacatgtgctccactcgttc

ttttcccacacttcttgcagcag

(ca)11

AY578868

DMOJ4050

4

196

atcgcatagaaagacactcatacgc

ctggaggcaagggaagtttcg

(ca)9

AY578869

DMOJ4060

4

211

cgagactcgctgataagtaaagcc

gattgtaattttggccgtgcgc

(ac)41

AY578870

DMOJ4100

4

126

cgcagacatatttgtctcccagc

ttcgtagccaagacaaactcacaac

(ga)11

AY578871

DMOJ4200

3e-10

4

120

gcttcaagccttgtgatttgttg

caagaagaacaagcgcattatgcaaa

(ct)24

AY578872

DMOJ4300

4

165

ggaaagaataccaacgcctatggc

gtccgcagacagccagc

(ca)12

AY578873

DMOJ4301

4

133

acatttggctgttacctggcac

ccaatgccagtgagtttctctctc

(ca)12

AY578874

DMOJ4302

2e-42

4

218

gtgtgtgcgtggatgtgttttac

gacagcactgaacagattatagataagcc

(ag)18

AY578875

DMOJ4303

4

174

cacggcaacacttgcagttacc

ccattgctcatagcccgtttacc

(ag)23

AY578876

DMOJ4304

4

171

ggcacattgccacaagtgtac

tctgtgccggaaatcgtcaac

(ga)20

AY578877

DMOJ5010

6e-04

5

117

ggcatagggaccgcagc

gtaaatattcgccaaacacctacatgc

(ac)8

AY578878

DMOJ5020

4e-06

5

144

ctacaggtatgaagaacctgaaccc

acaacagcctacacgcactc

(gt)11

AY578879

DMOJ5100

8e-18

5

156

agacaacttgactgttgctcgc

tgacactgattggtcgctgtg

(gt)8

AY578880

DMOJ5200

2e-26

5

154

tcgcacaactggcgcatg

atttttacagcacgcttaacaagaattttcac

(ca)13

AY578881

DMOJ5300

5

97

gtggtggacatcaaccagcc

tgagccaactttgagcataaattagcc

(ca)9

AY578882

DMOJ5400

5e-08

5

109

cttggatttcagctcagtcgctc

cgccacaatcagtcataggtcc

(gt)10

AY578883

DMOJ5500

5

121

ggaagcgtcgactgcatacc

gtgttgaaacgtatgtgtttgtgcc

(ca)10

AY578884

DMOJ5501

1e-04

5

99

cgtgccacgtaaactcttgcc

gaaggcaattcaattagttttgagagttatccc

(ac)9

AY578885

DMOJ5502

5

115

gcatattgacaaggacgagctgtc

tctgagtgcgtccattactttgtatc

(gt)12

AY578886

DMOJ5503

5

150

gtatacgacatgttggcactgcc

ttgcaagctgggcgtaagc

(tg)10

AY578887

DMOJA500

A

185

gagactgtttgacgcccgc

tcgatagacatgagtttggtctagaaacc

(tg)8

AY578888

DMOJA501

A

140

tcagtagcctctgctacggc

cgaacggaaattatgaactagtcagcc

(tc)30

AY578889

DMOJA502

A

138

ctgaaagttctggcagcaagagt

gtgtaatttagttgttagacgcgattgagag

(ct)14

AY578890

DMOJA503

A

153

taaggctctgtttcgtaactttgcc

ctgtcaatgtgctaaacattgcaacc

(ca)9

AY578891

DMOJA504

A

222

aatcatctgccccctttccac

ggaaaatgatgctcaggcaggt

(ac)13

AY578892

DMOJA505

A

181

ccatagtgcgatgcacgcttc

gccatagcccatagtagccaag

(tg)10

AY578893

DMOJA506

A

147

attaatgcaggccggaaagtcg

gctcgctctgcgtcgttatg

(gt)11

AY578894

DMOJA507

A

134

tcagccgggatgttaactaacttg

atgcttaccagagcgaatggc

(ac)12

AY578895

DMOJA508

A

196

ctctgcgacatgtagactacgc

gataaagttgaacttttactaccgatgcattc

(tg)10

AY578896

DMOJA509

A

186

gctgagaaacaaatttcgcatgcc

tgttgttgtcctttaacgaacgttcc

(tg)18

AY578897

DMOJA510

A

105

cacacagccagacttgacgttag

gcttttgattttgtcatagccattgctaaac

(tg)12

AY578898

DMOJA511

A

162

cttttctggctattacgagagcagc

aaaacataatgtaattgagctgacaaagcaac

(tg)30

AY578899

DMOJA512

A

120

gatgagaaataggcgttgctgtcc

gcatatgatgaaggctgagagctc

(ca)11

AY578900

DMOJA513

A

120

gctcagctaacagaaacaccca

gccgtagctgcagcatct

(tg)13

AY578901

DMOJA514

A

125

atggcgcaactcggtcg

gcagcacatttggctgctg

(gt)12

AY578902

DMOJA515

A

203

gaccgaacagcgcagcc

cacaaacctacataaacaccgcagtc

(ac)11

AY578903

DMOJA516

A

163

ggctgtaccaagcacacactc

cgctcgtgtcgtcgtcttc

(ca)13

AY578904

DMOJA517

A

87

gaaaacagctgcaaacccgtaaag

gctctcttaagcgctcaactatatagac

(ca)15

AY578905

DMOJA518

A

118

gtatgtatgggcatacagcggg

cttggttctatgatatgatgacgtgtct

(ca)7

AY578906

DMOJA519

A

182

atgaataggaatccagccagcg

agcgctttgcgtgcctac

(ca)14

AY578907

DMOJA520

A

164

tttcggcgcaaggtcgtc

ttagcttctttaccggcatcatgc

(gt)8

AY578908

DMOJA521

A

96

ttttgtttaggttttgcgcctaacc

ttttccataatttgtgcgtgtgcc

(ac)9

AY578909

DMOJA522

A

122

cctttcgagtgcctccacaac

gtcccactacatattgctacagctg

(ca)11

AY578910

DMOJA523

A

147

gcgtaagcacagttggactctc

tgtctgcggagttttatgctgtaa

(ct)23

AY578911

DMOJA524

A

135

tcgagagagattcgatcgagagc

cctgtttgcattatgtgggtgtc

(ac)12

AY578912


Staten et al. BMC Genetics 2004 5:12   doi:10.1186/1471-2156-5-12

Open Data