Table 2

Summary of polymorphism analysis

Parameter

Value

Comments


Number of loci screened

18

Total length of amplicons, bp.

6935

2349 coding, 4586 non-coding

Number of bases of sequence screened, bp.

213999

Number of all sequence variants (SNPs and Indels)

169

1 per 41 bp

Number of nucleotide substitutions

114

Transitions / Transversions ratio

1.53

Frequency of polymorphic sites per bp

0.0164

1 per 60.8 bp

Frequency of polymorphic sites per bp (coding)

0.0077

1 per 130.5 bp

Frequency of polymorphic sites per bp (non-coding)

0.021

1 per 47.7 bp

Number of Indels

55

Overall indel frequency

0.0079

1 per 126.1 bp

Frequency of indels per bp (coding)

0.0004

1 per 2349 bp

Frequency of indels per bp (non-coding)

0.0118

1 per 85 bp

Mean nucleotide diversity (π)

0.0063

Mean nucleotide expected heterozygosity

0.26

Mean haplotype expected heterozygosity

0.56


Ching et al. BMC Genetics 2002 3:19   doi:10.1186/1471-2156-3-19

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