Open Access Highly Accessed Research article

SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines

Ada Ching1, Katherine S Caldwell12, Mark Jung1, Maurine Dolan1, Oscar S (Howie) Smith3, Scott Tingey1, Michele Morgante1 and Antoni J Rafalski1*

Author Affiliations

1 DuPont Crop Genetics, Delaware Technology Park, Suite 200, P.O. Box 6104, Newark, Delaware 19714, USA

2 Present address: Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, Scotland

3 Pioneer Hi-Bred International, P.O. Box 1004, Johnston, IA 50131-1004, USA

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BMC Genetics 2002, 3:19  doi:10.1186/1471-2156-3-19

Published: 7 October 2002

Additional files

Additional File 1:

List of genes and PCR primers

Format: DOC Size: 28KB Download file

This file can be viewed with: Microsoft Word Viewer

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Additional File 2:

Frequency of polymorphisms and population parameters in coding and non-coding regions

Format: DOC Size: 48KB Download file

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Additional File 3:

Aligned sequence data in an interleaved text format, similar to NEXUS. Sequences from all loci examined are concatenated, the identity and location of sequences corresponding to each locus is in the file header.

Format: TXT Size: 392KB Download file

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Additional File 4:

Same data as file 1 but no locus identity information. DNAsp – compatible NEXUS format format. May be opened directly with DNAsp software (see Materials and Methods).

Format: NEX Size: 248KB Download file

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Additional File 5:

Same data as file 2 in MEGA format. May be opened directly with MEGA or DNAsp software (see Materials and Methods).

Format: MEG Size: 254KB Download file

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Additional File 6:

Excel file containing information about positions of individual loci in the concatenated sequence files Ching_data1, Ching_data2 and Ching_data3

Format: XLS Size: 16KB Download file

This file can be viewed with: Microsoft Excel Viewer

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