Table 2

Number of SNP found to be genome-wide significant in Nordic Holstein (NH) discovery population and validated at nominal significant level (P < 0.05) in Nordic Red (NR) and Jersey (JER)
Trait1 No. of genome-wide significant associations in NH Validated in NR Validated in JR Validated in both NR and JR Chromosome where the validated SNPs are located
AISC 490 81 79 23 1,2,3,4,5,6,7,8,9,10,11,13,14, 16,18,19,20,22,23,24,25,26,28
AISH 117 14 22 2 1,2,5,8,9,11,14,17,19,24,26,29
ICF 715 131 125 28 1,2,3,4,5,6,7,8,9,10,11,12,13, 14,15,16,17,18,19,20,21,22,23,24,26
IFLC 839 163 111 18 1,2,3,4,5,6,7,8,9,10,11,12,13, 14,15,16,17,18,19,20,21,22,23,24,25,26,27,28
IFLH 148 33 28 9 1,2,4,5,9,11,14,15,17,1,19,20, 22,26,27,29
NRRC 758 124 85 25 1,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,21,22,23,24,25,26,28,29
NRRH 434 68 66 13 1,2,3,4,5,6,7,8,9,10,11,12,13, 14,15,17,19,23,26,27,28,29
FTI 973 222 170 34 1,2,3,4,5,6,7,8,9,10,11,12,13, 14,15,16,17,18,19,20,21,23,24,25,26,27,28,29

1AIS: number of inseminations per conception, NRR: 56-day non-return rate, IFL: days from first to last insemination, ICF: length in days of the interval from calving to first insemination, FTI: fertility index. C and H denote whether the trait has been measured in cows or heifers, respectively.

Höglund et al.

Höglund et al. BMC Genetics 2014 15:8   doi:10.1186/1471-2156-15-8

Open Data