Table 4

AR and Tex11 SNP association analysis in the tropical composite population
Trait SNP P Allele Effect SE %Va
PNS18 AR1_In4 0.0127 T −6.384 2.551 5.646
PNS18 Tex11_r38k 0.0072 G −6.181 2.29 6.911
PNS18 Tex11_g297d 0.5780 A −1.655 2.992 0.299
PNS18 Tex11_r696h 0.0063 G −6.266 2.282 7.169
PNS24 AR1_In4 0.0784 T −4.137 2.347 2.368
PNS24 Tex11_r38k 0.0002 G −7.838 2.101 11.102
PNS24 Tex11_g297d 0.0594 A −5.127 2.715 2.863
PNS24 Tex11_r696h 0.0006 G −7.31 2.121 9.746
SC12 AR1_In4 5.02 x 10-6 T −1.427 0.3097 7.976
SC12 Tex11_r38k 4.00 x 10-15 G −2.155 0.2669 23.754
SC12 Tex11_g297d 3.35 x 10-5 A −1.517 0.3628 7.096
SC12 Tex11_r696h 2.22 x 10-16 G −2.28 0.2691 26.837
SC18 AR1_In4 4.98 x 10-7 T −1.565 0.3077 10.584
SC18 Tex11_r38k 4.88 x 10-14 G −2.066 0.2674 24.086
SC18 Tex11_g297d 7.45 x 10-4 A −1.222 0.3604 5.079
SC18 Tex11_r696h 1.44 x 10-14 G −2.137 0.2705 26.009
SC24 AR1_In4 1.66 x 10-7 T −1.548 0.2922 10.772
SC24 Tex11_r38k 3.03 x 10-12 G −1.839 0.2579 19.853
SC24 Tex11_g297d 0.0066 A −0.9469 0.3471 3.173
SC24 Tex11_r696h 2.18 x10-12 G −1.865 0.2597 20.607

Significance (P), allele substitution effect (Effect) for the named allele of each SNP, its standard error (SE) and percentage of additive variance (%Va) explained by 3 SNP genotypes in Tex11 and 1 SNP in AR on Scrotal Circumference (SC) at 12, 18 and 24 months of age and on the percentage of normal sperm (PNS) at 18 and 24 months of age.

Lyons et al.

Lyons et al. BMC Genetics 2014 15:6   doi:10.1186/1471-2156-15-6

Open Data