Table 1

Novel SNP or indels identified in the AR gene within the Brahman population using a small sample of high and low SC Brahman bulls
SNP Position on chr. Xa Gene Region Base change B1-B2 Primer pair#
1 88,621,617 5′UTR C - A For 5UTR + Rev exon1
2 88,621,614 5′UTR C - A
3 88,621,609* 5′UTR : - T
4 88,621,605 5′UTR : - T
5 88,619,468 Intron 1 G - A For exon 1 + Rev intron 1
6 88,491,830* Intron 2 C - T For Intron 1 + Rev Intron 2
7 88,449,481 Intron 2 T - G For Intron 2 + Rev Intron 3
8 88,418,830 Intron 4 G - A For Intron 4 + Rev intron 5
9 88,418,772 Intron 4 C - T
10 88,418,724 Intron 4 C - T
11 88,418,702 Intron 4 G - A
12 88,411,385 Intron 6 A - G For Intron 5 + Rev intron 6
13 88,411823 Intron 6 A - G For Intron 6 + Rev Intron 7
14 88,411595 Intron 7 C - A
15 88,411,276* Intron 7 T - A
16 88,411,702 3 UTR C - T For Intron 7 + Rev 3 UTR

aBased up UMD3.1 Bovine Genome Assembly.

*Not identified in bioinformatic analyses.

#In naming of primers, “For” indicated a forward primer and “Rev” indicated a reverse primer.

Lyons et al.

Lyons et al. BMC Genetics 2014 15:6   doi:10.1186/1471-2156-15-6

Open Data