|SNP and haplotype pattern of the phenylalanine ammonia-lyase (PAL) encoding gene, assessed by pyrosequencing assays for the SNPs 1, 3, 4 and 5 in a set of 190 European barley cultivars and the 6-rowed mapping parents Steptoe and Morex|
|Haplotypes||SNPs from 5' to 3'||Haplotype frequency (No. of cultivars) according row number and growth habit||Haplotype frequency (No. of cultivars)|
|PAL_H1||A (Pro)||C (Leu)||A (Arg)||G (Ala)||80||–||38||3||121|
|PAL_H2||C (Pro)||C (Leu)||A (Arg)||G (Ala)||13||1||3||25||42|
|PAL_H3||C (Pro)||T (Leu)||T (Arg)||A (Ala)||1||1||20||6||28|
|Unknown||Missing SNP information||–||–||–||1||1|
All SNP markers shown in 5' to 3' direction are localized in the exonic region. Coding amino acids are given in brackets. S = Spring, W = Winter, 2r = two-rowed, 6r = six-rowed.
Peukert et al.
Peukert et al. BMC Genetics 2013 14:97 doi:10.1186/1471-2156-14-97