Table 1

Summary of parameters and statistics estimated for the identified significant SNPs
Ensembl variant ID Illumina probe ID BTA14 Position (bp) n Effect allele Allele frequency CR a (%) HWE P-value βb (kg) SE T2c GC-T2d P-value
rs133012258 BovineHD1400007343 25376827 649 A 0.274 100.00 0.920 0.452 0.074 36.858 36.753 1.34×10-9
rs41627948 BovineHD1400007374 25504073 648 B 0.181 99.85 0.110 0.522 0.090 33.202 33.108 8.72×10-9
rs42646720 BovineHD1400007144 24590812 649 B 0.243 100.00 0.390 0.457 0.081 31.999 31.909 1.62×10-8
rs136764901 BovineHD1400007159 24651537 641 B 0.244 98.77 0.200 0.459 0.082 31.546 31.457 2.04×10-8
rs136287861 BovineHD1400006765 23313228 645 A 0.272 99.38 0.766 0.408 0.075 29.580 29.497 5.60×10-8

aCR Call rate.

bβ Estimated allele substitution effect.

cT2 Chi-squared statistics for β: <a onClick="popup('http://www.biomedcentral.com/1471-2156/14/52/mathml/M1','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/52/mathml/M1">View MathML</a>.

dGC-T2 Corrected Chi-squared statistics for β. Genomic control correction was performed by dividing the χ2 statistics by the distribution inflation/deflation factor estimate (λ = 1.002831).

Utsunomiya et al.

Utsunomiya et al. BMC Genetics 2013 14:52   doi:10.1186/1471-2156-14-52

Open Data