Table 7

SNPs associated with milk yielda
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs110127056 ASL 129.19 (93.50) 76.85 (65.52) −110.46 (78.95) −125.97 0.0325 0.1316 0.4235 0.6041
rs43114141 AVP −219.62 (96.69) 28.79 (76.21) 119.38 (80.43) 163.02 0.0070 0.0655 0.4035 0.6041
rs109032590 BOLA-DMB −196.31 (132.92) −48.42 (72.66) 84.09 (63.57) 137.68 0.0348 0.1316 0.9396 0.6799
rs135744058 CACNA1D −91.04 (169.91) −118.53 (71.28) 125.13 (61.36) 177.10 0.0103 0.0785 0.2251 0.5234
rs137601357 CAST 194.98 (100.40) 50.25 (63.19) −101.42 (76.03) −148.69 0.0150 0.0922 0.9681 0.6799
rs109621328 CD14 −1561.65 (401.52) −111.12 (117.92) 87.57 (47.23) 365.61 0.0010 0.0165 0.0071 0.4733
rs134432442 CPSF1 −415.14 (178.65) −181.24 (75.87) 170.79 (59.25) 323.52 <0.0001 0.0059 0.6155 0.6557
rs110270752 DEPDC7 166.55 (183.04) 144.62 (81.13) −83.06 (57.35) −175.37 0.0171 0.0933 0.0498 0.5180
rs109503725 DSC2 137.43 (81.39) −34.35 (61.57) 126.23 (80.26) −4.14 0.9427 0.6564 0.0498 0.5180
rs42075611 DTX2 419.42 268.38 −5.14 −235.63 0.0292 0.1274 0.7702 0.6642
(264.53) (162.59) (53.42)
rs133175991 DZIP3 −468.80 (238.09) −87.50 (84.96) 114.47 (60.92) 236.29 0.0041 0.0537 0.5411 0.6557
rs135071345 FAM5C 91.43 (282.11) 273.07 (82.89) −85.79 (54.42) −281.47 0.0007 0.0153 0.0993 0.5234
rs42339105 GOLGA4 1083.08 (686.77) −215.11 (108.30) 19.03 (53.55) 159.55 0.1543 0.3156 0.0341 0.5180
rs110828053 HSD17B7 −131.10 (2096.70) −142.60 (79.17) 93.43 (55.37) 183.95 0.0155 0.0922 0.3517 0.6041
rs110789098 IBSP −33.11 (96.27) 134.44 (70.23) −68.21 (78.36) −36.41 0.5439 0.5221 0.0406 0.5180
rs134011564 MARVELD1 1364.97 (686.88) 26.81 (52.94) 117.22 (122.41) 34.81 0.7874 0.6199 0.0432 0.5180
rs109761676 MS4A8B 20.93 (168.91) 161.86 (71.07) −101.57 (63.97) −159.13 0.0260 0.1216 0.0703 0.5180
rs109383758 NLRP9 −125.31 (86.14) 4.68 (64.67) 171.33 (84.75) 148.48 0.0108 0.0785 0.8290 0.6642
rs111027720 PARM1 −119.34 (90.81) −35.61 (63.47) 272.73 (77.68) 204.66 0.0005 0.0153 0.1875 0.5234
rs109506766 PGR −180.89 (117.82) −39.99 (66.65) 150.10 (69.77) 172.17 0.0059 0.0644 0.7877 0.6642
rs110805802 TDRKH 77.83 (317.74) 142.85 (96.21) −96.03 (53.67) −194.34 0.0362 0.1316 0.4145 0.6041
rs132789482 TSHB 399.97 (280.14) 219.67 (102.03) 0.15 (56.95) −211.99 0.0240 0.1208 0.9107 0.6799
rs134031231 TXN2 −37.85 (102.08) 122.46 (63.64) −76.26 (77.60) −44.81 0.4682 0.4715 0.0420 0.5180
rs134031231 TXN2 −37.85 (102.08) 122.46 (63.64) −76.26 (77.60) −44.81 0.4682 0.4715 0.0420 0.5180

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data