Table 6

SNPs associated with net merita
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs109967779 ACAT2 178.42 (48.24) 98.35 (30.35) 15.01 (31.97) −82.07 0.0012 0.0070 0.9660 0.8362
rs133700190 AP3B1 263.47 (82.15) 105.28 (35.29) 39.78 (27.83) −86.36 0.0043 0.0134 0.3700 0.7538
rs110541595 ARL6IP1 19.00 (47.24) 102.08 (31.27) 34.27 (33.92) −7.02 0.7872 0.4223 0.0471 0.6280
rs110127056 ASL 126.52 (40.99) 92.90 (30.18) 15.06 (35.27) −58.04 0.0190 0.0386 0.5267 0.7538
rs133455683 C17H22orf25 153.24 (44.49) 81.81 (32.19) 33.74 (34.16) −58.15 0.0227 0.0441 0.7567 0.8181
rs137673698 CCT8 −66.96 (384.43) 64.02 (25.15) 218.87 (70.34) 154.21 0.0254 0.0456 0.9513 0.8362
rs109621328 CD14 −330.45 (164.59) 75.08 (51.21) 92.99 (24.82) 71.41 0.1123 0.1167 0.0429 0.6280
rs133747802 CD2 25.05 (37.20) 51.73 (57.91) 124.90 (31.41) 50.51 0.0178 0.0378 0.6950 0.7831
rs1711496 CD40 −34.02 (37.54) 78.45 (30.39) 177.35 (37.44) 105.65 <0.0001 0.0011 0.8510 0.8362
rs109301586 COQ9 12.99 (36.38) 76.86 (32.52) 180.47 (35.29) 83.46 0.0002 0.0016 0.5816 0.7538
rs133449166 CSNK1E 148.36 (45.78) 74.03 (31.33) 5.10 (34.49) −71.12 0.0057 0.0166 0.9420 0.8362
rs110270752 DEPDC7 −205.46 (76.20) 57.40 (35.94) 89.30 (27.20) 90.54 0.0028 0.0104 0.0236 0.6280
rs43676052 EPAS1 47.14 (94.81) 10.96 (33.14) 121.94 (27.62) 84.96 0.0077 0.0211 0.1892 0.7538
FGF2ag FGF2 31.03 (49.04) 118.22 (31.03) 43.39 (31.60) −12.88 0.6165 0.3509 0.0341 0.6280
rs109247499 FST 142.59 (37.96) 75.63 (30.09) −3.82 (37.54) −73.25 0.0023 0.0102 0.8578 0.8362
rs41893756 FUT1 −54.03 (75.53) −39.78 (36.51) 134.76 (26.92) 133.31 <0.0001 0.0011 0.1074 0.7538
rs109711583 HSD17B12 168.57 (42.46) 73.40 (29.38) 18.20 (35.19) −72.89 0.0041 0.0134 0.5686 0.7538
rs109769865 HSD17B6 −17.39 (104.02) −12.91 (41.89) (25.95) 92.53 0.0091 0.0222 0.3951 0.7538
HSP70C895D HSPA1A 102.78 (62.61) 107.06 (32.41) 27.50 (28.95) −55.77 0.0417 0.0671 0.3526 0.9053
rs110789098 IBSP 75.84 (42.40) 127.06 (32.00) −15.18 (35.38) −56.10 0.0276 0.0460 0.0105 0.5680
rs111015912 LDB3 180.77 (83.38) 129.65 (33.53) 23.71 (27.55) −94.51 0.0018 0.0093 0.5936 0.7538
rs41256848 LHCGR 144.34 (44.56) 66.31 (29.33) 37.07 (34.33) −49.65 0.0452 0.0703 0.5546 0.9408
rs41859871 MON1B 459.24 (163.85) 148.99 (40.47) 43.67 (25.54) −125.76 0.0010 0.0067 0.2594 0.7538
rs43703916 MRPL48 13.22 (41.27) 88.01 (30.70) 118.26 (40.09) 52.03 0.0488 0.0735 0.461 0.9408
rs109761676 MS4A8B −72.05 (71.38) 50.4 (33.00) 112.45 (30.27) 77.88 0.0095 0.0222 0.5108 0.7538
rs133762601 NEU3 −23.09 (49.33) −94.09 (75.68) 83.89 (26.51) 61.77 0.0115 0.0256 0.1105 0.7538
rs134264563 OCLN 147.95 (65.06) 84.23 (31.17) 21.84 (29.23) −62.76 0.024 0.0448 0.9878 0.8362
rs111027720 PARM1 209.58 (41.04) 73.79 (30.13) −18.2 (35.56) −111.8 <0.0001 0.0011 0.5531 0.7538
rs109813896 PCCB 177.33 (50.88) 99.87 (30.79) 21.02 (30.85) −78.35 0.0024 0.0102 0.9856 0.8362
rs109629628 PMM2 290.06 (49.07) 103.79 (29.91) −34.46 (32.43) −156.4 <0.0001 0.0011 0.5195 0.7538
rs133729105 RABEP2 −8.85 (46.79) 48.97 (30.72) 117.46 (31.97) 64.29 0.0088 0.0222 0.8863 0.8362
rs110365063 SLC18A2 −63.33 (115.05) 160.24 (38.53) 50.69 (26.17) −57.22 0.0998 0.1136 0.0142 0.568
rs110660625 TBC1D24 178.3 (52.52) 71.03 (31.02) 12.25 (29.81) −75.7 0.0029 0.0104 0.528 0.7538
rs110805802 TDRKH −280.61 (126.98) −25.67 (41.26) 95.88 (25.52) 141.8 0.0002 0.0016 0.3684 0.7538

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data