Table 4

SNPs associated with cow conception ratea
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs109967779 ACAT2 1.89 (1.09) 1.03 (1.03) −0.61 (−0.61) −1.34 0.0216 0.0334 0.6559 0.3915
rs133700190 AP3B1 3.89 (1.95) 1.93 (0.78) −0.82 (0.59) −2.58 0.0004 0.0023 0.7487 0.3915
rs41766835 APBB1 2.78 (1.98) 1.64 (0.84) −0.19 (0.60) −1.67 0.0255 0.0361 0.7889 0.3915
rs110541595 ARL6IP1 −0.23 (1.09) 1.90 (0.69) −0.97 (0.76) −0.84 0.1781 0.1081 0.0059 0.1180
rs109669573 BCAS1 −1.68 (1.00) 1.01 (0.67) 1.16 (0.76) 1.24 0.0359 0.0421 0.1387 0.3915
rs135390325 C1QB −2.74 (6.74) −2.20 (0.99) 1.26 (0.51) 3.35 0.0012 0.0058 0.6761 0.3915
rs137601357 CAST −1.33 (0.98) 0.06 (0.65) 2.01 (0.76) 1.71 0.0032 0.0086 0.7283 0.3915
rs109447102 CCDC86 −2.22 (2.06) −0.40 (0.82) 1.14 (0.57) 1.60 0.0324 0.0408 0.9181 0.3992
rs137673698 CCT8 −10.00 (9.38) 0.18 (0.52) 4.14 (1.66) 4.16 0.0120 0.0204 0.5150 0.3915
rs41857027 CFDP2 −3.70 (1.31) 0.78 (0.93) 0.87 (0.48) 1.65 0.0068 0.0128 0.0517 0.3915
rs109301586 COQ9 −1.53 (0.83) 0.51 (0.73) 2.58 (0.79) 2.06 0.0002 0.0014 0.9796 0.4125
rs134432442 CPSF1 −3.08 (1.77) −0.14 (0.76) 1.26 (0.60) 1.77 0.0111 0.0199 0.5051 0.3915
rs133449166 CSNK1E 2.02 (1.03) 0.77 (0.67) −1.42 (0.75) −1.80 0.0026 0.0086 0.5917 0.3915
rs109443582 CSPP1 1.04 (6.88) −2.44 (1.23) 0.97 (0.56) 3.01 0.0026 0.0086 0.5917 0.3915
rs41893756 FUT1 −1.16 (1.79) −1.29 (0.82) 1.56 (0.57) 2.10 0.0033 0.0086 0.2157 0.3915
rs109516714 GPLD1 −2.36 (1.06) 0.67 (0.68) 1.40 (0.75) 1.67 0.0055 0.0110 0.1921 0.3915
rs110828053 HSD17B7 1.96 (2.01) 2.17 (0.78) −0.55 (0.57) −2.10 0.0039 0.0091 0.2472 0.3915
rs111015912 LDB3 4.74 (1.94) 1.56 (0.74) −0.28 (0.59) −2.12 0.0029 0.0086 0.5836 0.3915
rs134011564 MARVELD1 2.54 (6.20) 0.72 (0.54) −2.83 (1.13) −3.48 0.0029 0.0086 0.7852 0.3915
rs41859871 MON1B 7.15 (3.85) 1.56 (0.92) −0.01 (0.54) −1.96 0.0296 0.0387 0.3455 0.3915
rs133762601 NEU3 −2.06 (1.13) −1.56 (1.76) 1.03 (0.56) 1.62 0.0050 0.0106 0.5700 0.3915
rs133497176 NFKBIL1 −2.45 (2.57) −1.24 (0.93) 0.81 (0.54) 1.90 0.0251 0.0361 0.7873 0.3915
rs134264563 OCLN 1.70 (1.49) 1.11 (0.68) −0.57 (0.63) −1.37 0.0352 0.0421 0.5920 0.3915
rs111027720 PARM1 4.31 (0.89) 0.39 (0.64) −2.30 (0.77) −3.25 <0.0001 0.0010 0.4499 0.3915
rs109629628 PMM2 3.09 (1.13) 1.10 (0.64) −1.29 (0.71) −2.24 0.0002 0.0014 0.8245 0.3915
rs133729105 RABEP2 −1.44 (1.07) −0.14 (0.67) 1.79 (0.70) 1.68 0.004 0.0091 0.7211 0.3915
rs136746215 SEC14L1 −1.70 (1.02) 3.44 (1.23) 0.83 (0.72) 0.98 0.0988 0.0819 0.0037 0.1180
rs43321188 SERPINE2 4.29 (1.51) 0.09 (0.73) 0.24 (0.60) −1.10 0.0972 0.0819 0.0389 0.3890
rs110365063 SLC18A2 7.68 (2.61) 0.44 (0.86) 0.41 (0.57) −1.15 0.1468 0.0998 0.0197 0.2627
rs110660625 TBC1D24 2.36 (1.21) 1.49 (0.69) −0.90 (0.67) −1.86 0.0021 0.0086 0.4047 0.3915
rs110805802 TDRKH −10.71 (3.00) −2.18 (0.92) 1.66 (0.53) 4.53 <0.0001 0.0010 0.1826 0.3915
rs134282928 WBP1 3.78 (5.57) −1.21 (0.89) 1.16 (0.58) 2.03 0.0296 0.0387 0.2062 0.3915
rs110883602 ZP2 −2.77 (1.10) 0.94 (0.81) 2.76 (0.78) 2.62 <0.0001 0.0010 0.3468 0.3915

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data