Table 2

SNPs associated with daughter pregnancy ratea
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs109967779 ACAT2 0.85 (.58) 0.33 (0.36) −0.98 (0.37) −1.00 0.0015 0.0040 0.4072 0.5155
rs133700190 AP3B1 1.67 (1.04) 0.46 (0.42) −0.70 (0.32) −1.17 0.0026 0.0058 0.9680 0.5492
rs41766835 APBB1 0.20 (1.05) 0.78 (0.44) −0.63 (0.31) −0.95 0.0163 0.0175 0.1417 0.5155
rs110541595 ARL6IP1 −0.40 (0.58) 0.63 (0.37) −0.92 (0.41) −0.50 0.1337 0.0849 0.0079 0.4213
rs110217852 BSP3 −1.82 (0.73) −0.21 (0.37) 0.24 (0.35) 0.81 0.0169 0.0176 0.2764 0.5155
rs133455683 C17H22orf25 0.83 (0.53) −0.16 (0.37) −0.76 (0.40) −0.77 0.0150 0.0166 0.6773 0.5155
rs135390325 C1QB −3.43 (3.62) −1.23 (0.53) 0.25 (0.28) 1.51 0.0061 0.0091 0.8484 0.5155
rs109332658 C7H19orf60 −1.40 (0.84) −0.37 (0.39) 0.20 (0.34) 0.69 0.0558 0.0478 0.6871 0.5155
rs135744058 CACNA1D 0.29(0.88) 0.69 (0.37) −0.81 (0.32) −1.03 0.0038 0.0072 0.1000 0.5155
rs137601357 CAST −1.35 (0.52) −0.45 (0.35) 0.79 (0.41) 1.09 0.0004 0.0015 0.6970 0.5155
rs109447102 CCDC86 −1.48 (1.10) −0.74 (0.44) 0.33 (0.31) 1.00 0.0125 0.0153 0.8179 0.5155
rs109621328 CD14 6.90 (2.10) 0.65 (0.63) −0.28 (0.28) −1.66 0.0043 0.0072 0.0291 0.5155
rs41711496 CD40 −0.76 (0.45) 0.03 (0.35) 0.73 (0.45) 0.74 0.0150 0.0166 0.9815 0.5510
rs41857027 CFDP2 −2.53 (0.80) 0.04 (0.57) 0.34 (0.30) 0.92 0.0029 0.0058 0.1016 0.5155
rs109301586 COQ9 −1.42 (0.44) −0.16 (0.39) 1.16 (0.42) 1.29 <0.0001 0.0006 0.9458 0.5426
rs134432442 CPSF1 −1.90 (0.94) −0.36 (0.41) 0.24 (0.33) 0.82 0.0255 0.0239 0.4347 0.5155
rs133449166 CSNK1E 0.60 (0.55) −0.22 (0.36) −0.86 (0.40) −0.72 0.0224 0.0226 0.8492 0.5155
rs109443582 CSPP1 −0.61 (3.63) −1.68 (0.65) −1.68 (0.29) 1.61 0.0131 0.0155 0.4607 0.5155
rs110270752 DEPDC7 −2.66 (0.94) −0.69 (0.43) 0.31 (0.31) 1.25 0.0010 0.0031 0.4458 0.5155
rs109503725 DSC2 −1.06 (0.45) −0.14 (0.35) 0.52 (0.45) 0.79 0.0099 0.0136 0.7673 0.5155
rs109561866 DYRK3 −1.58 (2.06) −1.06 (0.51) −0.06 (0.29) 0.95 0.0538 0.0473 0.8323 0.5155
rs41893756 FUT1 −1.08 (0.95) −1.51 (0.44) 0.61 (0.30) 1.47 0.0001 0.0006 0.0448 0.5155
rs109516714 GPLD1 −1.60 (0.57) −0.22 (0.36) 0.38 (0.40) 0.92 0.0043 0.0072 0.4062 0.5155
rs109711583 HSD17B12 0.76 (0.52) −0.04 (0.34) −0.69 (0.42) −0.72 0.0258 0.0239 0.08603 0.5155
rs110828053 HSD17B7 0.79 (1.09) 0.80 (0.42) −0.62 (0.31) −1.12 0.0044 0.0072 0.2996 0.5155
rs111015912 LDB3 2.43 (1.03) 0.80 (0.39) −0.74 (0.31) −1.51 <0.0001 0.0006 0.9462 0.5426
rs134011564 MARVELD1 −0.33 (3.63) 0.07 (0.32) −1.76 (0.67) −1.75 0.0107 0.0141 0.5477 0.5155
rs41859871 MON1B 4.57 (2.06) 0.78 (0.49) −0.47 (0.29) −1.50 0.0019 0.0047 0.2680 0.5155
rs109248655 MRGPRF N/A N/A −1.42 (0.63) 0.03 (0.28) 1.45 0.0288 0.0260 N/A N/A
rs109761676 MS4A8B −1.78 (0.88) −0.77 (0.37) 0.65 (0.34) 1.31 0.0004 0.0015 0.7240 0.5155
rs133762601 NEU3 −1.51 (0.60) −1.39 (0.94) 0.07 (0.30) 0.84 0.0064 0.0091 0.4928 0.5155
rs133497176 NFKBIL1 −1.22 (1.38) −1.31 (0.50) 0.11 (0.28) 1.14 0.0117 0.0149 0.3687 0.5155
rs109383758 NLRP9 0.57 (0.45) −0.22 (0.34) −0.78 (0.45) −0.67 0.0253 0.0239 0.7887 0.5155
rs134264563 OCLN 0.92 (0.80) 0.31 (0.36) −0.81 (0.34) −0.98 0.0048 0.0075 0.6312 0.5155
rs111027720 PARM1 2.21 (0.47) 0.11 (0.34) −2.38 (0.40) −2.31 <0.0001 0.0006 0.6458 0.5155
rs109813896 PCCB 1.51 (0.62) 0.11 (0.36) −0.71 (0.37) −1.02 0.0014 0.0040 0.5355 0.5155
rs109629628 PMM2 1.43 (0.61) 0.03 (0.35) −0.99 (0.38) −1.16 0.0004 0.0015 0.6895 0.5155
rs133729105 RABEP2 −1.36 (0.57) −0.38 (0.36) 0.53 (0.37) 0.94 0.0027 0.0058 0.9448 0.5426
rs110660625 TBC1D24 1.21 (0.65) 0.32 (0.37) −0.89 (0.36) −1.10 0.0006 0.0021 0.7474 0.5155
rs110805802 TDRKH −6.62 (1.59) −1.64 (0.49) 0.67 (0.29) 2.70 <0.0001 0.0006 0.1513 0.5155
rs132789482 TSHB −3.05 (1.49) 0.50 (0.56) 0.40 (0.33) 0.60 0.2270 0.1145 0.0493 0.5155
rs110883602 ZP2 −1.83 (0.56) −0.11 (0.42) 1.09 (0.40) 1.42 <0.0001 0.0006 0.6224 0.5155

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information data base SNP.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data