Table 12

SNPs associated with somatic cell scorea
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs110127056 ASL 4.36 (0.16) 3.87 (0.11) 4.04 (0.14) −0.13 0.2141 0.5831 0.0305 0.3684
rs133674837 BDH2 3.81 (0.19) 4.19 (0.11) 3.92 (0.12) −0.01 0.8913 0.7535 0.0403 0.3993
rs109332658 C7H19orf60 4.65 (0.28) 3.89 (0.12) 4.00 (0.11) −0.13 0.2968 0.5831 0.0234 0.3684
rs133747802 CD2 3.99 (0.15) 4.66 (0.25) 3.92 (0.12) −0.28 0.0281 0.0281 0.3365 0.5851
rs41857027 CFDP2 4.31 (0.28) 4.34 (0.20) 3.89 (0.10) 0.26 0.0394 0.0394 0.6166 0.5851
rs134432442 CPSF1 3.73 (0.32) 3.83 (0.13) 4.14 (0.10) 0.26 0.0394 0.0394 0.6166 0.5851
rs109503725 DSC2 3.80 (0.14) 3.88 (0.11) 4.48 (0.14) 0.34 0.0008 0.0008 0.0846 0.3993
rs109247499 FST 3.90 (0.14) 3.89 (0.11) 4.41 (0.14) 0.25 0.0083 0.0083 0.0759 0.3993
rs133497176 NFKBIL1 6.52 (0.45) 3.91 (0.16) 3.97 (0.09) −0.42 0.0030 0.1167 0.0001 0.0054
rs109629628 PMM2 3.84 (0.20) 3.90 (0.11) 4.24 (0.12) 0.23 0.0359 0.0359 0.4032 0.5851
rs136746215 SEC14L1 4.19 (0.11) 3.99 (0.14) 3.88 (0.08) −0.15 0.0183 0.0183 0.7550 0.5851
rs132789482 TSHB 4.49 (0.30) 3.81 (0.11) 3.95 (0.06) −0.02 0.8513 0.7535 0.0307 0.3684
rs134031231 TXN2 3.83 (0.17) 3.94 (0.10) 4.26 (0.13) 0.23 0.0352 0.0352 0.5155 0.5851

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data