Table 10

SNPs associated with protein yielda
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs43114141 AVP −3.77 (2.96) 2.87 (2.35) 5.42 (2.48) 4.42 0.0144 0.0800 0.4680 0.7313
rs137601357 CAST 9.16 (3.09) 5.14 (2.00) −1.52 (2.37) −5.53 0.0028 0.0575 0.6131 0.7424
rs109621328 CD14 −39.70 (12.16) −0.10 (3.65) 5.04 (1.58) 9.79 0.0035 0.0575 0.0146 0.3650
rs41857027 CFDP2 12.23 (4.90) −1.35 (3.47) 4.31 (1.89) −1.17 0.6037 0.4223 0.0209 0.3919
rs133449166 CSNK1E 10.22 (3.21) 4.36 (2.12) −0.42 (2.35) −5.23 0.0046 0.0575 0.8397 0.7524
rs133175991 DZIP3 −4.58 (7.33) −0.03 (2.67) 6.11 (1.96) 5.84 0.0206 0.0942 0.8601 0.7589
rs43676052 EPAS1 −2.57 (6.94) 0.11 (2.28) 5.63 (1.83) 5.02 0.0307 0.1171 0.7324 0.7424
rs135071345 FAM5C 4.42 (8.71) 7.84 (2.59) 1.09 (1.72) −5.28 0.0383 0.1226 0.3144 0.7275
rs109247499 FST 6.97 (2.66) 5.29 (2.03) −3.76 (2.64) −5.37 0.0033 0.0575 0.1623 0.6407
rs109830880 GCNT3 14.32 (12.06) 10.53 (3.41) 1.60 (1.99) −8.26 0.0126 0.0788 0.7110 0.7424
rs110828053 HSD17B7 −2.55 (6.34) −2.60 (2.45) 5.19 (1.78) 6.14 0.0073 0.0729 0.3258 0.7275
rs133497176 NFKBIL1 −16.34 (8.03) 9.12 (2.91) 2.02 (1.67) −1.10 0.6802 0.4316 0.0010 0.0750
rs109383758 NLRP9 0.15 (2.64) 1.30 (2.01) 8.03 (2.60) 3.97 0.0226 0.0942 0.2734 0.7275
rs111027720 PARM1 1.28 (2.84) 1.13 (2.04) 8.95 (2.45) 4.15 0.0211 0.0942 0.1269 0.6309
rs109506766 PGR −4.20 (3.59) 2.38 (2.06) 6.25 (2.15) 4.85 0.0102 0.0729 0.6220 0.7424
rs109629628 PMM2 10.21 (3.60) 4.58 (2.09) 0.05 (2.29) −4.94 0.0095 0.0729 0.8427 0.7524
rs43572154 ROR2 −6.90 (9.46) −1.15 (2.61) 4.30 (1.72) 5.49 0.0328 0.1171 0.9776 0.7789
rs43321188 SERPINE2 −5.56 (4.72) 2.32 (2.29) 5.06 (1.90) 4.21 0.0413 0.1226 0.4365 0.7275
rs134031231 TXN2 3.77 (3.14) 7.53 (2.00) −1.97 (2.41) −3.81 0.0417 0.12264 0.0135 0.3650

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data