Table 2

Imputation accuracy of SNP on chromosome 12 measured by IA or by R2
Scenario Genotype design Accuracy of imputation
Grandparents Parents Progeny IA R2
1 HD HD LowD 0.962 0.884
2 HD LowD LowD 0.833 0.408

Comparison of two measures of accuracy of imputation calculated using experimental data (tagSNP panel = 30 SNP), under two situations: 1) F0 and F1 at high density (HD), F2 at low density (LowD), 2) F0 at HD, F1 and F2 at LowD.

Gualdrón Duarte et al.

Gualdrón Duarte et al. BMC Genetics 2013 14:38   doi:10.1186/1471-2156-14-38

Open Data