Table 2

Identified nucleotide polymorphisms in the porcine β-defensin exon 2 region
Gene SNP positiona Nucleotide Amino acidb RFLP MAFc
pBD1 171 A/G / BstN I 0.177
pBD4 65 G/A R/K EcoR V 0.451
pBD113 114 A/G / - 0.029
pBD114 186 G/A / - 0.09
pBD115 144 A/T Q/H - 0.057
pBD115 291 G/A / - 0.043
pBD121 96 G/A / Pci I 0.2
pBD133 196 A/C K/Q - 0.043

a The numbering starts from the translation start codon.

b Nonsynonymous changes are indicated by single letter code.

c MAF, minor allele frequency; 35 pigs of 7 breeds (Landrace, Yorkshire, Berkshire, Duroc, Korean Native Pig, Seoul National University miniature Pig, and NIH miniature pig) were used for genotyping.

Choi et al.

Choi et al. BMC Genetics 2012 13:98   doi:10.1186/1471-2156-13-98

Open Data