Table 3

Timing results
Number of pools
50 75 100 150
3-loci Dataset
TDSPool 0.4458 0.4331 0.4743 0.4861
0.4260 0.4772 0.5346 0.5350
HaploPool 0.0697 0.0642 0.0607 0.0674
0.0593 0.0681 0.0607 0.0691
HIPPO 2.3593 3.0793 3.8856 5.3911
2.4182 3.2047 4.1161 5.5873
10-loci Dataset
TDSPool 0.8094 0.7778 1.0367 1.1259
1.0269 1.0805 1.1804 1.3920
HaploPool 0.5136 0.7381 0.9554 1.4012
0.8531 1.2331 1.6247 2.4078
HIPPO 59.5605 62.7163 64.1563 71.0505
58.8816 64.6515 64.5386 73.9019
HapMap
Dataset TDSPool 1.0189 1.1660 1.1765 1.5455
1.8760 2.0830 2.1848 3.2719
HaploPool 0.6737 0.9577 1.2679 1.8489
1.1636 1.6928 2.2006 3.2905

For each dataset in each algorithm the first line corresponds to the case that each pool has 2 individuals whereas the second line to the case that each pool has three individuals. Time is given in seconds.

Iliadis et al.

Iliadis et al. BMC Genetics 2012 13:94   doi:10.1186/1471-2156-13-94

Open Data