Table 1

Two-Way (batch and gender) ANOVA estimates of batch effects: Ref-mean, mean of BC males of Batch 1 (n=22)
Trait Ref-mean1 Actual trait mean values by batch2 S3 Mean All4 CV -Batch (%)5 CV-within (%)6
1 2 3 4 5 6
WIC 60.32 55.57 55.90 57.43 53.37 34.13 43.62 50.00 18.43 51.50
STR 20.05 19.36 18.40 18.18 16.18 8.05 18.58 *** 16.46 25.84 72.40
STRTV 15.77 15.43 14.42 13.15 11.48 5.45 15.44 *** 12.56 30.24 81.80
STRTC 4.27 3.93 3.98 5.03 4.70 2.60 3.14 3.90 23.49 61.30
TPS 50.05 47.70 51.31 37.25 29.80 16.13 41.85 *** 37.34 34.50 93.20
MPAR 2.50 2.46 2.79 2.05 1.84 2.00 2.25 *** 2.27 21.62 54.20
%PARD 0.33 0.40 0.31 0.29 0.33 0.15 0.45 *** 0.32 31.35 94.10
NINF 5.46 4.56 4.14 4.32 3.98 3.57 4.01 *** 4.10 8.23 44.40
NT 5.32 4.36 4.05 4.92 4.53 4.38 4.67 4.49 6.64 27.30
NTI 2.82 1.95 2.22 2.80 2.34 2.23 2.02 ** 2.26 13.28 33.30
NIT 0.72 0.74 0.79 0.73 0.77 0.32 0.74 *** 0.68 25.90 68.50
MNT 0.09 0.10 0.06 0.07 0.06 0.17 0.10 *** 0.09 44.08 119.20
MNT1 0.05 0.03 0.03 0.04 0.03 0.07 0.04 ** 0.04 39.82 96.40
DF1 14.27 14.23 15.21 28.86 26.59 24.38 15.40 *** 20.78 31.54 70.20
DT1 18.68 23.50 35.41 29.62 68.18 25.34 30.23 *** 35.38 46.92 143.20
DC1A 32.96 37.72 51.00 58.79 96.44 51.39 45.17 *** 56.75 36.43 113.40
DF2 31.46 37.51 23.73 35.65 57.53 40.13 29.27 *** 37.30 31.00 93.10
DCIB 50.14 61.05 55.43 61.12 129.14 66.71 59.65 *** 72.18 38.98 112.30
DT2 33.19 42.24 57.32 51.99 33.82 8.01 17.78 *** 35.19 54.88 146.40
DC2A 64.52 77.36 79.76 87.79 95.98 47.51 49.63 ** 73.00 27.45 68.40
DC12 97.86 113.48 122.16 145.41 195.68 97.73 95.03 *** 128.25 29.45 80.10
PCI 31.12 32.34 29.72 36.61 29.55 31.84 30.93 *** 31.83 8.14 22.30
MPC 24.10 24.48 24.50 25.01 25.07 22.54 24.22 *** 24.30 3.81 10.50
MXPC 33.14 33.41 34.42 35.45 33.45 29.73 35.93 *** 33.73 6.56 18.40
MNPC 15.64 16.04 15.48 14.84 16.05 15.49 15.54 15.57 2.87 7.80
PCSR 30.32 30.59 32.51 29.63 29.27 25.51 35.24 30.46 10.76 32.00
PCF1 26.18 26.27 28.33 23.44 29.05 22.58 30.93 *** 26.77 12.26 31.20
PCT1 17.46 17.56 16.63 15.79 17.57 18.50 17.30 *** 17.22 5.37 15.80
PCF2 25.46 24.74 25.33 25.79 27.01 22.91 25.74 ** 25.25 5.41 16.10
PCT2 17.38 17.35 16.40 17.18 18.59 18.17 17.69 * 17.57 4.39 12.50
PCIF1 −4.94 −6.07 −1.39 −13.17 −0.51 −10.46 0.01 *** −5.26 105.94 259.60
PCF1T1 −8.73 −8.70 −11.31 −7.32 −11.65 −3.86 −13.64 *** −9.42 37.44 103.80
PCIT1 −13.66 −14.78 −12.87 −20.78 −11.66 −14.32 −13.63 *** −14.67 21.73 63.00
PCT1F2 8.00 7.33 8.70 10.00 9.25 4.54 8.15 * 8.00 24.05 67.30
WTI 204.32 194.86 196.58 167.93 157.03 150.34 143.66 *** 168.40 13.44 35.70
MWT 201.49 188.40 198.00 199.11 167.79 153.95 164.51 *** 178.63 10.67 3.00
MXWT 235.82 217.73 230.73 235.31 195.19 176.42 195.99 *** 208.56 11.06 3.00
MNWT 171.09 161.86 166.67 161.32 138.94 133.73 130.77 *** 148.88 10.82 3.00
WTF1 191.84 181.36 182.72 181.81 150.26 151.08 152.56 *** 166.63 10.09 2.00
WTT1 178.09 167.19 175.67 167.48 174.40 135.07 158.70 *** 163.08 9.20 3.00
WTF2 181.82 176.73 191.84 176.97 167.09 150.66 146.29 *** 168.26 10.28 3.00
WTE 231.19 215.90 201.50 197.16 164.16 140.12 168.33 ** 186.92 2.88 22.20
WTIF1 −9.78 −13.60 −11.03 15.04 −1.35 −2.12 15.37 *** 0.38 3244.26 258.00
WTIT1 −27.71 −26.88 −25.48 −0.15 6.01 −22.26 9.24 *** −9.92 168.58 37.00
WTC −2.83 −6.46 1.41 31.19 10.76 3.62 20.86 *** 10.23 190.73 42.00
WTC-W 0.03 −0.36 0.41 0.92 −0.24 −3.85 0.85 *** −0.38 469.69 152.00
WTF1T1 −10.82 −11.26 −1.61 −2.93 8.78 −8.89 −2.93 *** −3.14 222.21 64.00
WTT1F2 4.60 −10.73 17.95 28.99 15.33 55.33 11.99 * 19.81 109.73 23.00
WT1E 35.90 31.72 31.76 23.72 24.68 8.24 24.46 *** 25.77 11.73 114.42

1These animals served as reference group for the fixed effects analysis.

2Actual trait mean values by batch, corrected for gender effects.

3Mean (All), average trait value across all batches (n=192);

4S, maximum significance of an individual batch compared to reference group.

5CV (%)-within, mean within batch coefficient of variation combined across all batches;

6CV%-batch; coefficient of variation among batch means.

Orenge et al.

Orenge et al. BMC Genetics 2012 13:87   doi:10.1186/1471-2156-13-87

Open Data