Table 1 |
|||||||
| Number of Pi2/9 homologs in the rice, sorghum and Brachypodium genomes | |||||||
| Accession name | Species | Subspecies/Genome type | NBS-LRRs | NBS or LRRfragments | Total | Source of sequences | References |
| Nippobare | O. sativa | Japonica/AA | 6 | 1 | 7 | WGSb | [41] |
| NK58 | O. sativa | Japonica/AA | 6 | 1 | 7 | WGS | [46] |
| 75-1-127 | O. sativa | Indica/AA | 8 | 1 | 9 | BAC sequencingc | [18] |
| C101A51 | O. sativa | Indica/AA | 8 | 1 | 9 | BAC sequencing | [19] |
| 93-11 | O. sativa | Indica/AA | 4 | 0 | 4 | WGS | [42] |
| PA64 | O. sativa | Indica/AA | 5 | 0 | 5 | WGS | [43] |
| GLA4 | O. sativa | Indica/AA | 3 | 2 | 5 | WGS | [46] |
| IR24 | O. sativa | Indica/AA | 4 | 1 | 5 | WGS | This study |
| SH527 | O. sativa | Indica/AA | 4 | 1 | 5 | WGS | This study |
| MH 63 | O. sativa | Indica/AA | 4 | 1 | 5 | WGS | This study |
| GQ280269 | O. officinalis | CC | 6 | 0 | 6 | BAC sequencing | [20] |
| GQ280268 | O. minutaa | CC | 7 | 3 | 10 | BAC sequencing | [20] |
| GQ280267 | O. minutaa | BB | 2 | 0 | 2 | BAC sequencing | [20] |
| GQ280266 | O. punctata | BB | 4 | 0 | 4 | BAC sequencing | [20] |
| GQ280265 | O. nivara | AA | 2 | 0 | 2 | BAC sequencing | [20] |
| IA96717 | O. glaberrimab | AA | 0 | 5 | 5 | BESd | [47] |
| IA105491 | O. rufipogon | AA | 0 | 12 | 12 | BES | [47] |
| IA105143 | O. alta | CCDD | 0 | 3 | 3 | BES | [47] |
| IA100882 | O. australiensis | EE | 0 | 6 | 6 | BES | [47] |
| IA101232 | O. brachyantha | EE | 0 | 2 | 2 | BES | [47] |
| IA104502 | O. coarctatad | HHKK | 0 | 3 | 3 | BES | [47] |
| IA102118 | O. granulata | GG | 0 | 6 | 6 | BES | [47] |
| IA100821 | O. ridleyi | HHJJ | 0 | 6 | 6 | BES | [47] |
| Q2436 | O. sativa | Indica/AA | 0 | 7 | 7 | PCR | This study |
| GM2 | O. sativa | Indica/AA | 0 | 8 | 8 | PCR | This study |
| Tetep | O. sativa | Indica/AA | 0 | 6 | 6 | PCR | This study |
| Tadukan | O. sativa | Indica/AA | 0 | 7 | 7 | PCR | This study |
| Total | 73 | 83 | 156 | ||||
| BTx623 | S. bicolor | 5 | 0 | 5 | WGS | [49] | |
| Bd21 | B.distachyon | 1 | 0 | 1 | WGS | [50] | |
aO. minuta is an allotetroploid species with the BBCC genome constitution.
b WGS, whole-genome sequencing.
c BAC, bacterial artificial chromosome.
d BES: BAC end sequence.
Wu et al. BMC Genetics 2012 13:73 doi:10.1186/1471-2156-13-73
