Table 1

Number of Pi2/9 homologs in the rice, sorghum and Brachypodium genomes
Accession name Species Subspecies/Genome type NBS-LRRs NBS or LRRfragments Total Source of sequences References
Nippobare O. sativa Japonica/AA 6 1 7 WGSb [41]
NK58 O. sativa Japonica/AA 6 1 7 WGS [46]
75-1-127 O. sativa Indica/AA 8 1 9 BAC sequencingc [18]
C101A51 O. sativa Indica/AA 8 1 9 BAC sequencing [19]
93-11 O. sativa Indica/AA 4 0 4 WGS [42]
PA64 O. sativa Indica/AA 5 0 5 WGS [43]
GLA4 O. sativa Indica/AA 3 2 5 WGS [46]
IR24 O. sativa Indica/AA 4 1 5 WGS This study
SH527 O. sativa Indica/AA 4 1 5 WGS This study
MH 63 O. sativa Indica/AA 4 1 5 WGS This study
GQ280269 O. officinalis CC 6 0 6 BAC sequencing [20]
GQ280268 O. minutaa CC 7 3 10 BAC sequencing [20]
GQ280267 O. minutaa BB 2 0 2 BAC sequencing [20]
GQ280266 O. punctata BB 4 0 4 BAC sequencing [20]
GQ280265 O. nivara AA 2 0 2 BAC sequencing [20]
IA96717 O. glaberrimab AA 0 5 5 BESd [47]
IA105491 O. rufipogon AA 0 12 12 BES [47]
IA105143 O. alta CCDD 0 3 3 BES [47]
IA100882 O. australiensis EE 0 6 6 BES [47]
IA101232 O. brachyantha EE 0 2 2 BES [47]
IA104502 O. coarctatad HHKK 0 3 3 BES [47]
IA102118 O. granulata GG 0 6 6 BES [47]
IA100821 O. ridleyi HHJJ 0 6 6 BES [47]
Q2436 O. sativa Indica/AA 0 7 7 PCR This study
GM2 O. sativa Indica/AA 0 8 8 PCR This study
Tetep O. sativa Indica/AA 0 6 6 PCR This study
Tadukan O. sativa Indica/AA 0 7 7 PCR This study
Total 73 83 156
BTx623 S. bicolor 5 0 5 WGS [49]
Bd21 B.distachyon 1 0 1 WGS [50]

aO. minuta is an allotetroploid species with the BBCC genome constitution.

b WGS, whole-genome sequencing.

c BAC, bacterial artificial chromosome.

d BES: BAC end sequence.

Wu et al.

Wu et al. BMC Genetics 2012 13:73   doi:10.1186/1471-2156-13-73

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