Table 2

Novel SNPS in the promoter region, and * I199V non synonymous SNP (previously published), including positions relative to transcription start site, base pair change and minor allele frequency in 3 crossbred pig populations: Large White, Duroc and Pietrain-sired F1 female offspring with a common Large White x Landrace background
SNP 1>2 NCBI SNP submission # SNP position relative to TSS Allele frequency
Large white X Duroc X Pietrain X
n = 30 n = 23 n = 32
g.-995A>G 472333124 −995 0.45 (G) 0.28 (G) 0.23 (G)
g.-968G>A 472333125 −968 0.48 (A) 0.28 (A) 0.23 (A)
g.-671A>G 472333126 −671 0.48 (G) 0.28 (G) 0.23 (G)
g.-583C>T 472333127 −583 0.48 (T) 0.28 (T) 0.23 (T)
g.-480C>T 472333128 −480 0.05 (T) 0.05 (T) 0.00 (T)
g.-461C>T 472333129 −461 0.00 (T) 0.17 (T) 0.00 (T)
g.-311A>G 472333130 −311 0.36 (G) 0.07 (G) 0.11 (G)
g.-221G>A 472333131 −221 0.37 (A) 0.07 (A) 0.11 (A)
g.-158C>G 472333132 −158 0.42 (C) 0.30 (G) 0.27 (G)
g.-58A>G 472333133 −58 0.43 (A) 0.30 (G) 0.27 (G)
I199V 2774 0.34 0.17 0.42

Ryan et al.

Ryan et al. BMC Genetics 2012 13:66   doi:10.1186/1471-2156-13-66

Open Data