Table 1

Means and standard deviations (SD) of gametic LD (<a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M1','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M1">View MathML</a>), composite LD (<a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M2">View MathML</a>) and zygotic LD (<a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M3','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M3">View MathML</a>) between syntenic SNP pairs for different ranges of distance (≤ 5 Mb) in the Kinsella composite beef population
Distance range (Mb) Pairs (n) <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M4','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M4">View MathML</a>±SD <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M5','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M5">View MathML</a>± SD <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M6','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M6">View MathML</a>± SD <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M7','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M7">View MathML</a>≥0.25 (%) <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M8','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M8">View MathML</a>≥0.25 (%) <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M9','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M9">View MathML</a>≥0.25 (%)
<0.025 5692 0.2853±0.3071 0.2857±0.3070 0.1812±0.3011 38.3 38.5 22.9
0.025-0.05 20032 0.2175±0.2638 0.2178±0.2638 0.1230±0.2425 29.5 29.4 15.8
0.05-0.075 18041 0.1615±0.2191 0.1619±0.2192 0.0799±0.1884 20.8 20.9 10.0
0.075-0.1 17838 0.1277±0.1832 0.1278±0.1832 0.0561±0.1479 15.6 15.5 6.7
0.1-0.2 69905 0.0912±0.1420 0.0914±0.1422 0.0340±0.1059 9.4 9.5 3.6
0.2-0.5 205321 0.0569±0.0885 0.0571±0.0887 0.0159±0.0559 3.7 3.7 1.0
0.5-1.5 665397 0.0394±0.0580 0.0395±0.0581 0.0091±0.0300 1.3 1.3 0.3
1.5-3 968768 0.0286±0.0424 0.0286±0.0424 0.0062±0.0195 0.5 0.5 0.1
3-5 1252994 0.0214±0.0315 0.0214±0.0316 0.0045±0.0131 0.1 0.1 0.0

Percentages of SNP pairs with LD values of ≥0.25 are also presented. a The Generalized measures of gametic and zygotic LD (<a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M10','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M10">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M11','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M11">View MathML</a>) are based on an exact 2 × 2 contingency table and thus they are simply the squared correlations, i.e., <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M12','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M12">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2156/13/65/mathml/M13','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/13/65/mathml/M13">View MathML</a>.

Jiang et al.

Jiang et al. BMC Genetics 2012 13:65   doi:10.1186/1471-2156-13-65

Open Data