Table 1

Genetic diversity values for SNPs across the 401 accessions of the common bean wild (104 accessions) and cultivated (297 accessions) collections
Gene Set of sequences SNP Position consensus SNP type Majority allele Minority allele Majority allele frequency Minority allele frequency PIC*
Asr1 Cultivated 1 621 [T/C] T C 0.56 0.44 0.49
Wild intron 1 57 [A/C] A C 0.91 0.09 0.17
2 68 [T/C] T C 0.88 0.12 0.21
Wild exon 1 20 [T/C] C T 0.97 0.03 0.05
2 161 [T/C] T C 0.81 0.19 0.31
3 233 [T/C] C T 0.84 0.16 0.27
Asr2 Total** 1 24 [A/T] T A 0.86 0.14 0.25
2 29 [T/G] G T 0.86 0.14 0.25
3 127 [C/G] C G 0.98 0.02 0.03
Cultivated 1 6 [A/T] A T 0.93 0.07 0.12
2 26 [A/T] T A 0.93 0.07 0.12
3 31 [T/G] G T 0.93 0.07 0.12
Wild 1 247 [C/G] G C 0.93 0.07 0.13
2 345 [A/C] C A 0.62 0.38 0.47
3 350 [A/T] A T 0.62 0.38 0.47

* PIC values higher than 0.2 indicated in bold text, PIC values between 0.1 and 0.19 indicated in italics.**Polymorphic sites only observed in heterozygotes are not depicted.

Cortés et al.

Cortés et al. BMC Genetics 2012 13:58   doi:10.1186/1471-2156-13-58

Open Data