Table 1

Linear mixed model analysis of the rumen position experiment
Source of variation DPI_rumen JGI_rumen
Host Animal 1.22% *** 9.00% ***
Sampling Position 0.07% *** 0.48% ***
Contig 57.41% 54.03%
Error 41.31% 36.49%

A linear mixed model (Yijk = μ + positioni + contigj + animalk + eijk) was fitted to the read using ASReml [21] count data, where Y = logn transformed counts, position = the position within the rumen that the sample was from, animal = the host animal that samples were taken from. *** p < 0.00001.

Ross et al.

Ross et al. BMC Genetics 2012 13:53   doi:10.1186/1471-2156-13-53

Open Data