Table 3

scIvana_1-based fragments with homology to nucleotide sequences deposited in GenBank (e-value < e-5)
Marker code Size (bp) GenBank accession no. Homology E-valuea
DIsIvSI 138 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-27
DIsIvSI 160 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 8e-27
DIsIvSI 208 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 5e-29
DIsIvSI 310 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-28
DIsIvSI 337 EU969904.1 Zea mays clone 337091 mRNA sequence 6e-28
DIsIvSI 390 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial 5e-178
sequence
AC216031.1 Oryza minuta clone OM__Ba0016E09, complete sequence 1e-70
DIsIvSI 412 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-147
AC216031.1 Oryza minuta clone OM__Ba0016E09, complete sequence 4e-60
SIsIvSI 158 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-28
SIsIvSI 180 AC169373.2 Sorghum bicolor clone SB_BBc0188M08, complete sequence 3e-36
FN431662.1 Sorghum bicolor BAC contig 24P17c, cultivar Btx623 1e-34
SIsIvSI 245 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-28
SIsIvSI 330 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-28
RIsIvSI 195 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 5e-29
DIsIvLI 228 AE009947.2 Saccharum ‘SP-80-3280’ chloroplast, complete genome 3e-90
DIsIvLI 272 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 9e-106
DIsIvLI 415 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-93
DIsIvLI 605 DQ115032.1 Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence 2e-102

a All are standard nucleotide-nucleotide BLASTn scores.

Palhares et al.

Palhares et al. BMC Genetics 2012 13:51   doi:10.1186/1471-2156-13-51

Open Data