Table 2
Association analysis based on MLM
Trait Marker LG Environment R2 p value Putative function
DF BM143a 2 drought 0.4643 0.0315 * -
DF BM143a 2 irrigation 0.4747 0.0302 * -
DF BSn109_SNP4 8 drought 0.2035 0.0023 ** -
DF BSn109_SNP4 8 irrigation 0.2016 0.0024 ** -
DF BSn244_2a 3 drought 0.1383 0.0015 ** acyl acp-thioesterase
DF BSn244_2a 3 irrigation 0.1457 0.0011 ** acyl acp-thioesterase
DM BSn66_SNP2 2 drought 0.1883 0.0039 ** auxin response factor 2
DM BSn66_SNP2 2 irrigation 0.2420 0.0010 *** auxin response factor 2
DM BSn85_SNP2 8 drought 0.1017 0.0239 * transcription factor bhlh96-like
DM BSn85_SNP2 8 irrigation 0.1073 0.0218 * transcription factor bhlh96-like
EP BSNPK18 8 drought 0.1204 0.0337 * oxygen-evolving enhancer protein chloroplastic-like
EP BSNPK18 8 irrigation 0.1235 0.0323 * oxygen-evolving enhancer protein chloroplastic-like
PLA BSn244_2 3 drought 0.0527 0.0461 * acyl acp-thioesterase
PLA BSn244_2 3 irrigation 0.0694 0.0235 * acyl acp-thioesterase
PP BSn14_SNP3 9 drought 0.0918 0.0310 * -
PP BSn14_SNP3 9 irrigation 0.0839 0.0484 * -
PP BSn66_SNP2 2 drought 0.1552 0.0094 ** auxin response factor 2
PP BSn66_SNP2 2 irrigation 0.1524 0.0133 * auxin response factor 2
SP BSNPK18 8 drought 0.1385 0.0206 * oxygen-evolving enhancer protein chloroplastic-like
SP BSNPK18 8 irrigation 0.1114 0.0460 * oxygen-evolving enhancer protein chloroplastic-like
SPL BSn244_2 3 drought 0.0568 0.0390 * acyl acp-thioesterase
SPL BSn244_2 3 irrigation 0.0667 0.0283 * acyl acp-thioesterase
SPL BSn66_SNP2 2 drought 0.1359 0.0192 * auxin response factor 2
SPL BSn66_SNP2 2 irrigation 0.1173 0.0391 * auxin response factor 2
Yield BSn66_SNP2 2 drought 0.1205 0.0352 * auxin response factor 2
Yield BSn66_SNP2 2 irrigation 0.1157 0.0406 * auxin response factor 2
Yield BSn85_SNP2 8 drought 0.1050 0.0235 * transcription factor bhlh96-like
Yield BSn85_SNP2 8 irrigation 0.0879 0.0421 * transcription factor bhlh96-like

Trait abbreviations: Days to flowering (DF), days to maturity (DM), pods per plant (PP), seed per pod (SP), seed per plant (SPL), empty pod% (EP), pod length average (PLA)

a Significant association with Bonferroni correction based on GLM.

Galeano et al. BMC Genetics 2012 13:48   doi:10.1186/1471-2156-13-48

Open Data