Table 2
Summary of genetic diversity measures across African and commercial populations
sample He Ho MNA Ar (N > 10) Fis LEHWE LDHWE
BEN-Atl 0.534 0.512 4.64 4.06 0.041
BEN-Lit 0.588 0.613 4.41 - −0.044
BEN-Cou 0.574 0.606 3.82 - −0.060
BEN-Mon 0.562 0.558 3.95 - 0.008
BEN-Oué 0.550 0.591 3.55 - −0.081
BEN-Bor 0.548 0.540 5.14 3.95 0.013
BEN-Don 0.526 0.503 4.14 3.81 0.046
CIV-Agn 0.605 0.595 4.82 4.40 0.018
CIV-SCo 0.638 0.616 5.32 4.84 0.036 1
CIV-Lag 0.612 0.574 4.77 4.40 0.064
CIV-Lac 0.591 0.586 6.00 4.54 0.009
CIV-NCo 0.553 0.528 5.05 4.30 0.045 1
GHA-Ash 0.565 0.561 3.64 - 0.009
GHA-Eas 0.619 0.625 5.09 4.33 −0.010
GHA-Wes 0.612 0.583 5.14 4.32 0.048 1
GHA-Nor 0.571 0.551 4.95 4.25 0.035
GHA-UEa 0.510 0.503 3.77 3.58 0.014
GHA-UWe 0.561 0.553 4.18 4.18 0.015 1
MAR-Mek 0.665 0.579 5.36 4.48 0.131* 2
CAM-Cen 0.635 0.637 5.46 4.57 −0.003
CAM-Est 0.634 0.664 3.36 - −0.052
CAM-Sud 0.632 0.647 5.55 4.54 −0.024
CAM-ONO 0.632 0.613 4.73 4.21 0.032 1
BS-C 0.499 0.512 3.09 2.92 −0.025
BS-D 0.481 0.475 3.55 3.13 0.012
BD-B 0.482 0.484 3.14 2.92 −0.003
WEL-A 0.297 0.295 2.14 2.04 0.008
BEL-C 0.406 0.360 2.95 2.77 0.115* 2

He: non-biased expected heterozygosity; Ho: observed heterozygosity; MNA: mean number of alleles per locus; Ar (N > 10): allelic richness computed for populations with more than 10 individuals genotyped for each locus; Fis*: significant value after sequential bonferroni correction; LD number of Loci in heterozygote Deficiency/Excess, after sequential Bonferroni correction.

Leroy et al. BMC Genetics 2012 13:34   doi:10.1186/1471-2156-13-34

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