Table 2

Indexes of splicing regulatory factors

No

Features

Symbol

Reference

1

5' splice site strength (Shapiro score)

SH5'ss

[31]

2

3' splice site strength (Shapiro score)

SH3'ss

[31]

3

5' spice site strength (maximum entropy)

ME5'ss

[32]

4

3' spice site strength (maximum entropy)

ME3'ss

[32]

5

5' splice site strength (information content/Ri)

Ri5'ss

[33]

6

3' splice site strength (information content/Ri)

Ri3'ss

[33]

7

U1 SnRNA binding free energy

FE

[35]

8

ESE density (RESCUE ESE/RESE)

RESE-D

[36]

9

ESE density (PESE)

PESE-D

[38]

10

ESS density (FAS-ESS/FESS)

FESS-D

[37]

11

ESS density (PESS)

PESS-D

[38]

12

SF2/ASF number

SF2/ASF-N

[39]

13

SF2/ASF (IgM/BRCA1) number

SF2/ASF (IgM, BRCA1)-N

[39]

14

SRp40 number

SRp40-N

[39]

15

SC35 number

SC35-N

[39]

16

SRp55 number

SRp55-N

[39]

17

SF2/ASF score density

SF2/ASF-D

[39]

18

SF2/ASF (IgM/BRCA1) score density

SF2/ASF (IgM-BRCA1)-D

[39]

19

SC35 score density

SC35-D

[39]

20

SRp40 score density

SRp40-D

[39]

21

SRp55 score density

SRp55-D

[39]

22

5' splice site pre-mRNA secondary structure free energy

RSS5'ss

[40]

23

3' splice site pre-mRNA secondary structure free energy

RSS3'ss

[40]

24

5' splice site GC content

GC5'ss

[40]

25

3' splice site GC content

GC3'ss

[40]

26

The number of nucleotides in exon

SIZE

Malueka et al. BMC Genetics 2012 13:23   doi:10.1186/1471-2156-13-23